Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C35D10.11
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Query: C35D10.11 CE01192 status:Confirmed
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MSP_domain MSP (Major sperm protein) domain 108.5 1.5e-30 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MSP_domain 1/1 2 108 .. 1 138 [] 108.5 1.5e-30
Alignments of top-scoring domains:
MSP_domain: domain 1 of 1, from 2 to 108: score 108.5, E = 1.5e-30
*->elklePpvtvtvfpnnlpfdkqggtstltltNpsdkriaFKvKtTnn
+l+ +Pp ++ v+++ + g+st++l+N + +++ FK+K++nn
C35D10.11 2 SLTADPPACT-VPAA--G-----GASTHKLVNAGAEKMIFKIKSSNN 40
klYrVrPvyGilePgesvniavtrnvvVtlqrfkglpkpddknkdKfvvq
+ Yr+ Pv+G+++P s++i++t r++g+pk +dK+vv+
C35D10.11 41 NEYRITPVFGFVDPSGSKDITIT--------RTAGAPK-----EDKLVVH 77
yleapsedadrqqkraareafkaaaaagvlvgerkipvvfe<-*
+ ap++++d+q a++a ++a++ +ip++++
C35D10.11 78 FAAAPADATDAQ----AAFAAITPAGTI------TIPMSAT 108