Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C35C5.4
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Query: C35C5.4 CE18544 locus:mig-2 RAS-related protein status:Partially_confirmed TR:P90979 protein_id:CAB01691.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ras Ras family 286.6 4.9e-84 1
Peptidase_M10_N Matrix metalloprotease, N-terminal do 2.6 6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_M10_N 1/1 139 160 .. 1 25 [. 2.6 6
ras 1/1 9 195 .] 1 198 [] 286.6 4.9e-84
Alignments of top-scoring domains:
Peptidase_M10_N: domain 1 of 1, from 139 to 160: score 2.6, E = 6
*->lPlssvveatgtsetdvelAerYLe<-*
+P+s+ + g+++ ++ A++YLe
C35C5.4 139 SPISK---TQGMKMAQKIKAVKYLE 160
ras: domain 1 of 1, from 9 to 195: score 286.6, E = 4.9e-84
*->KlVliGDsGVGKSsLliRFtdnkFveeYipTIGvDFytktvevDGkt
K+V++GD+ VGK++ li +t+++F+ +Y+pT+ +D+y+ ++ +DG +
C35C5.4 9 KCVVVGDGTVGKTCMLISYTTDSFPVQYVPTV-FDNYSAQMSLDGNV 54
vkLqIWDTAGQERFralrpaYYRgAqGfLLVYDITsrdSFenvk.kWlee
v L +WDTAGQE++++lrp++Y+++++f+L++++ s+ SF+nv++kW++e
C35C5.4 55 VNLGLWDTAGQEDYDRLRPLSYPQTDVFILCFSVVSPVSFDNVAsKWIPE 104
ilrhadkdenvpivLVGNKcDLedded.le.lte.gqkRvVsteeGealA
i++h++ + p++LVG+K DL+d+ ++ + l+ +g ++s+ +G ++A
C35C5.4 105 IRQHCP--D-APVILVGTKLDLRDEAEpMRaLQAeGK-SPISKTQGMKMA 150
kelgAlpFmETSAKtntNVeeaFeelareilkkvsevnvnldqpakkkks
++++A++++E+SA+t+ + ++Fe+++r il ++ + +++ +
C35C5.4 151 QKIKAVKYLECSALTQQGLTQVFEDAVRSILHPK-----PQKKK-----K 190
kCcil<-*
+C+i+
C35C5.4 191 SCNIM 195