Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C35A11.4
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Query: C35A11.4 CE08583 sugar transporter status:Partially_confirmed TR:O16547 protein_id:AAB66037.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
sugar_tr Sugar (and other) transporter 211.7 3.1e-60 2
RNA_pol_Rpc4 RNA polymerase III RPC4 6.0 1.6 1
Competence Competence protein 3.5 8.6 1
DUF644 Protein of unknown function, DUF644 1.9 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Competence 1/1 56 90 .. 258 292 .] 3.5 8.6
RNA_pol_Rpc4 1/1 133 177 .. 141 189 .] 6.0 1.6
DUF644 1/1 232 255 .. 1 26 [. 1.9 9.6
sugar_tr 1/2 12 354 .. 1 368 [. 146.3 2.2e-41
sugar_tr 2/2 396 500 .. 382 488 .] 68.5 5.6e-19
Alignments of top-scoring domains:
Competence: domain 1 of 1, from 56 to 90: score 3.5, E = 8.6
*->llavpnaawvvvaapllllllallslllllllrll<-*
+++ n + +vva +l+ l++ +s+ l+ +++++
C35A11.4 56 DNTLQNIWSFVVAILFLGALAGSFSIRLIADWIGR 90
RNA_pol_Rpc4: domain 1 of 1, from 133 to 177: score 6.0, E = 1.6
*->vsmGldteFLQdvv......vvdiddDvrPAqDqesgnailLGrvqk
vs+Gl + FL+++ +++++++++ +g + LG v +
C35A11.4 133 VSLGLSALFLSEASpkqnrgAIGMM----------TGTCVQLGTVCG 169
klvvtPDf<-*
++++ P++
C35A11.4 170 SVIAMPQI 177
DUF644: domain 1 of 1, from 232 to 255: score 1.9, E = 9.6
*->plellakkLteivRaaKnkdlkepkk<-*
++ +k+L+ei++++Kn++ ++ k
C35A11.4 232 EIDEAEKHLNEIKEEQKNST--KNFK 255
sugar_tr: domain 1 of 2, from 12 to 354: score 146.3, E = 2.2e-41
*->valvaalgGgflfGyDtgvigg.......flalidflfrfglltssg
va++++++G+f fG+++ + + +++ +f +++ ++++ g+l +++
C35A11.4 12 VAVITSIAGSFHFGFNLVLTNPsqeaflnFMNQTLAKRFDGGLSDNT 58
alaslvgystvltglvvsifflGrliGslfaGklgdrfGRkksllialvl
++ ++ vv+i+flG+l Gs++ ++d++GRk++l i++++
C35A11.4 59 LQNI--------WSFVVAILFLGALAGSFSIRLIADWIGRKNGLYISIAV 100
fviGallsgaapgytTiGlwafyllivGRvlvGlgvGgasvlvPmYisEi
v ++++s+a++ + f+l+i+ R+++G +v + +l+++++sE
C35A11.4 101 GVLAGGMSIASKFI-----PLFELYIASRIVMGWSVSVSLGLSALFLSEA 145
APkalRGalgslyqlaitiGilvAaiiglglnktnndsalnswgWRiplg
+Pk +RGa+g++ +++++G + + i+ + + + + W + +
C35A11.4 146 SPKQNRGAIGMMTGTCVQLGTVCGSVIAMPQIFGTE------DLWWLIYA 189
lqlvpalllligllflPESPRwLvekgkleeArevLak.....lrgvedv
++ + l++ ++l+f PESP +L+ +g +e A++++a + +++ e++
C35A11.4 190 TEIGIMLFFGAALPFFPESPGFLIQRGATEAATKSIAYyynceIDEAEKH 239
dqeiqeikaeleatvseekagkaswgelfrgrtrpkvrqrllmgvmlqaf
ei+e++ + ++ ++ ++ r ++ +r ++gv+++++
C35A11.4 240 LNEIKEEQKNSTKNFKMM--------DIVRKKS---LRDKAFIGVVVTFA 278
qQltGiNaifYYsptifksvGvsdsvasllvtiivgvvNfvfTfvaLifl
++G +i+ ++ i+k+ G++ a l++ +++vv +++ +va +
C35A11.4 279 MSFSGVAVINAFAFDILKDTGLKVLEA-SLANDAISVVSMISSIVA-AVI 326
vDrfGRRpllllGaagmaicflilgasigvall<-*
vDr GRRplll+++ag +c li+ al+
C35A11.4 327 VDRNGRRPLLLISFAGILVCNLIIF-----ALM 354
sugar_tr: domain 2 of 2, from 396 to 500: score 68.5, E = 5.6e-19
*->givaivfillfiafFalgwGpipwvilsElFPtkvRskalalataan
g+++i+fi++f +fFalg+Gp++++i++El + Rs+a++ a + +
C35A11.4 396 GFILICFICIFTFFFALGPGPLCYFINAELVGQAARSAAQSWASVIQ 442
wlanfiigflfpyitgaiglalggyvflvfagllvlfilfvfffvPETkG
+l+ f+i ++f ++ +++g ++++ ++f++ ++++ ++ +f +PETk+
C35A11.4 443 MLSRFVIVTAFLPMKNQLG--EAWSYLILFVAPVAASLVYLYFSLPETKN 490
rtLEeieelf<-*
+ +e+ee+
C35A11.4 491 KNPFEVEEAI 500