Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C34G6.2
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Query:  C34G6.2  CE08574    status:Partially_confirmed TR:O01497 protein_id:AAB52481.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
ShTK       ShTK domain                                  151.2    6.6e-44   4
tyrosinase Common central domain of tyrosinase           62.5    1.5e-16   2
hemocyanin Hemocyanin, copper containing domain           5.3        2.3   1
TIL        Trypsin Inhibitor like cysteine rich domai     4.6        4.1   1
NAGLU      Alpha-N-acetylglucosaminidase (NAGLU)          2.8        3.1   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
NAGLU        1/1     155   164 ..   133   142 ..     2.8      3.1
tyrosinase   1/2     153   187 ..   102   138 ..    26.5  1.6e-06
hemocyanin   1/1     293   318 ..   271   296 .]     5.3      2.3
tyrosinase   2/2     282   381 ..   269   379 .]    39.8  3.1e-10
ShTK         1/4     457   493 ..     1    44 []    41.8  4.7e-11
ShTK         2/4     501   537 ..     1    44 []    49.1  3.2e-13
TIL          1/1     584   601 ..     1    20 [.     4.6      4.1
ShTK         3/4     567   603 ..     1    44 []    39.0  3.5e-10
ShTK         4/4     611   646 ..     1    44 []    45.2  4.6e-12

Alignments of top-scoring domains:
NAGLU: domain 1 of 1, from 155 to 164: score 2.8, E = 3.1
                   *->gGPAFlAWaR<-*
                      +GPAFl+W+R
     C34G6.2   155    SGPAFLPWHR    164

tyrosinase: domain 1 of 2, from 153 to 187: score 26.5, E = 1.6e-06
                   *->vHesplFlpWHRwYLyfyEriLgklindptFAlPYWn<-*
                      +H++p+FlpWHR ++ ++E +L+ +   pt+ lPYW+
     C34G6.2   153    AHSGPAFLPWHREFVKRVEFALRQVD--PTVNLPYWD    187

hemocyanin: domain 1 of 1, from 293 to 318: score 5.3, E = 2.3
                   *->lddysTsLRDPvFYrlhkrIdnifqe<-*
                      + d+ Ts  DP+F+  h +Id +  e
     C34G6.2   293    MFDTATSSNDPSFFLHHAFIDFVWEE    318

tyrosinase: domain 2 of 2, from 282 to 381: score 39.8, E = 3.1e-10
                   *->HNpvHiwtGgntkynlPngisngedMgsfysaafDPIFylHHsNVDR
                      H  vHi++Gg              dM  + ++++DP F+lHH++ D
     C34G6.2   282    HGNVHIFVGG--------------DMFDTATSSNDPSFFLHHAFIDF 314

                   lWsiWkalggksFrt.....dfpeadwlis.hfrfydenpfppkrvkvrD
                   +W++W    + + ++++   ++++  ++ ++hf   +++pf p   ++ D
     C34G6.2   315 VWEEWRLARQSR-ADreiafPPDNQLCASAqHFGASPMQPFSP--MRNID 361

                   cfdtsrpklGYdYedqptpw<-*
                    +  +  +  Y+Y++ pt
     C34G6.2   362 GLSNKYTDNLYSYAPRPTCQ    381

ShTK: domain 1 of 4, from 457 to 493: score 41.8, E = 4.7e-11
                   *->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
                      +C+   +++ +Ca+wa+ Ge C++++   ++m+e C+ +CG C+
     C34G6.2   457    SCF---NENQCCASWAASGE-CSRNT---AYMNEWCKASCGVCK    493

ShTK: domain 2 of 4, from 501 to 537: score 49.1, E = 3.2e-13
                   *->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
                      +C+   D+++ C++w + Ge C++++    +m+enC+k+C+ C+
     C34G6.2   501    DCT---DRHTQCSSWSRSGE-CTKNQ---LWMTENCRKSCNKCG    537

TIL: domain 1 of 1, from 584 to 601: score 4.6, E = 4.1
                   *->CpaneqyteCgpsCepsCsn<-*
                      C +n  y +C   C +sC++
     C34G6.2   584    CRKNTRYMACN--CRVSCGH    601

ShTK: domain 3 of 4, from 567 to 603: score 39.0, E = 3.5e-10
                   *->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
                      +C+   +++++Ca w  +Ge C++++   ++m+ nC+ +CG C+
     C34G6.2   567    GCF---NENVCCAVWGLMGE-CRKNT---RYMACNCRVSCGHCY    603

ShTK: domain 4 of 4, from 611 to 646: score 45.2, E = 4.6e-12
                   *->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
                      +Cv   D++ +Ca wa+ Ge C+++    ++m+enC+ +C+ C+
     C34G6.2   611    SCV---DYHRSCAGWARVGE-CQKN----PWMAENCRSSCNSCY    646



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