Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C34G6.6a
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Query: C34G6.6a CE29699 status:Partially_confirmed TR:O01494 protein_id:AAB52479.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PAN PAN domain 367.9 1.3e-114 6
zona_pellucida Zona pellucida-like domain 48.8 4.1e-12 1
DUF643 Protein of unknown function (DUF643) 3.7 6.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PAN 1/6 25 97 .. 1 103 [] 7.3 0.44
PAN 2/6 104 190 .. 1 103 [] 92.9 5e-28
PAN 3/6 212 300 .. 1 103 [] 98.5 8.7e-30
PAN 4/6 307 397 .. 1 103 [] 100.7 1.8e-30
PAN 5/6 404 491 .. 1 103 [] 67.8 4e-20
DUF643 1/1 565 575 .. 1 11 [. 3.7 6.4
PAN 6/6 505 576 .. 1 103 [] 25.9 6.1e-07
zona_pellucida 1/1 839 953 .. 170 296 .] 48.8 4.1e-12
Alignments of top-scoring domains:
PAN: domain 1 of 6, from 25 to 97: score 7.3, E = 0.44
*->CsggrsfhfervpgrslgfdvsvvknvpsleeClalClneprsgleF
C+++ + f++ ++ g+ ++++ +++l eC + C+++ +
C34G6.6a 25 CPPETQTIFVLQHNTTVGARIRTI-PTSNLAECSDHCSASLD----- 65
vCrsftYnnkskeClLssessgslgsgstlpqrsprlkrpptSgsqkvdy
C+ + + + +C ++ s+ ++ +
C34G6.6a 66 -CQGVEFKDG--SCAVFRAGSEK---------------A-----TAGSQL 92
yenksC<-*
+ +C
C34G6.6a 93 LTK-TC 97
PAN: domain 2 of 6, from 104 to 190: score 92.9, E = 5e-28
*->Csggrsfhfervpgrsl.gfdvsvvknvpsleeClalClnepr.sgl
C+++ f+f+++++r+l gf+++vv+++ +++ C+a+Cln+ +++
C34G6.6a 104 CQSP--FQFDLFEQRILvGFAREVVPAA-NIQICMAACLNAFDtF-- 145
eFvCrsftYnnkskeClLssessgslgsgstlpqrsprlkrpptSgsqkv
+F+C+s++++++++eC+L++e++ + +p+l+ ++ ++++v
C34G6.6a 146 GFECESAMFYPVDQECILNTEDRLD----------RPSLFVEE--SDDTV 183
dyyenksC<-*
+y++n +C
C34G6.6a 184 IYMDN-NC 190
PAN: domain 3 of 6, from 212 to 300: score 98.5, E = 8.7e-30
*->Csggrsfhfervpgrsl.gfdvsvvknvpsleeClalClnepr.sgl
C++++++++++v+g++l+++ ++++ nv +l+ C+alC++ + s++
C34G6.6a 212 CYPPYITQYIAVEGKQLkNELDRII-NV-DLDSCQALCTQRLSiSSN 256
eFvCrsftYnnkskeClLssessgslgsgstlpqrsprlkrpptSgsqkv
+F C+sf+Ynnk+++C+L +e s++lg +++l+ +++
C34G6.6a 257 DFNCKSFMYNNKTRTCILADERSKPLG--------RADLIA-----TEGF 293
dyyenksC<-*
+y+e+ C
C34G6.6a 294 TYFEK-KC 300
PAN: domain 4 of 6, from 307 to 397: score 100.7, E = 1.8e-30
*->Csggrsfhfervpgrsl.gfdvsvvknvpsleeClalClnepr.sgl
C++ +s f+rvp+++l gf+ v++nvps+++Cl++C+n p ++g+
C34G6.6a 307 CRNVPS--FKRVPQMILvGFAAFVMENVPSVTMCLDQCTNPPPeTGD 351
eFvCrsftYnnkskeClLssessgslgsgstlpqrsprlkrpptSgsqkv
+FvC+s++Y+++++eC+L+se+++s +p l+ p+ +++ v
C34G6.6a 352 GFVCKSVMYYYNEQECILNSETRES----------KPELFIPEG-EEFLV 390
dyyenksC<-*
dy++ +C
C34G6.6a 391 DYFDI-TC 397
PAN: domain 5 of 6, from 404 to 491: score 67.8, E = 4e-20
*->Csggrsfhfervpgrsl.g.....fdvsvvknvpsleeClalClnep
C+ g+++ +r++++ l++++++ +++++ +++ + eC a+C + +
C34G6.6a 404 CPTGQHLKAIRTINAALpEgeselHVLKAS-AAKGIKECVAKCFGLA 449
rsgleFvCrsftYnnkskeClLssessgslgsgstlpqrsprlkrpptSg
++Crsf+Y++k+k+C L +++ +l+++
C34G6.6a 450 P----EKCRSFNYDKKTKSCDLLYLDGHN------------TLQPQV--- 480
sqkvdyyenksC<-*
q+vd+y++ +C
C34G6.6a 481 RQGVDLYDL-HC 491
DUF643: domain 1 of 1, from 565 to 575: score 3.7, E = 6.4
*->iNEISdFYDnL<-*
iNE dFY nL
C34G6.6a 565 INEHTDFYKNL 575
PAN: domain 6 of 6, from 505 to 576: score 25.9, E = 6.1e-07
*->Csggrsfhfervpgrsl.gfdvsvvknvpsleeClalClneprsgle
f r+ +++ +g +v k v sl+ Cl+ C+++p+
C34G6.6a 505 A------LFSRYLHTKQrGIPAKVYKVV-SLNSCLEVCAGNPT---- 540
FvCrsftYnnkskeClLssessgslgsgstlpqrsprlkrpptSgsqkvd
C ++Yn+ + C L++ + + ++ +d
C34G6.6a 541 --CAGANYNRRLGDCTLFDAIDDD-------------AEI-----NEHTD 570
yyenksC<-*
+y n C
C34G6.6a 571 FYKN-LC 576
zona_pellucida: domain 1 of 1, from 839 to 953: score 48.8, E = 4.1e-12
*->vtkkLGdplyvevsvlqrsdpplglfldsCvATpteDpdpns.spry
v +kLGd l +++++ + d++l++f+++C A p+ + +++
C34G6.6a 839 VQAKLGDILELRWEI-MAMDDELDFFVKNCHAEPGVAGGKAGaGEKL 884
diidngCcld.vddkyltsfspvgsssfpshylrFqfkaFkFvdssssls
+id gC+ v k+++ + +s ++ +++aF+F +s
C34G6.6a 885 RLIDGGCPTPaVAQKLIPGAIEI----KSSAVKTTKMQAFRFDSS----- 925
pLrslVYihCsvkvCdpscpdsdlcnkaCsfn<-*
++ +C+v +C ++c++ + c + ++
C34G6.6a 926 ---ASIRVTCEVEICKGDCEPVE-CALTGGVK 953