Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C34F11.9a
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C34F11.9a CE31680 dishevelled-like protein status:Partially_confirmed TR:Q95ZX3 protein_id:AAM98047.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DIX DIX domain 135.0 1.3e-36 1
PDZ PDZ domain (Also known as DHR or GLGF) 94.0 2.5e-25 1
DEP Domain found in Dishevelled, Egl-10, and 73.2 5.6e-18 1
Dishevelled Dishevelled specific domain 63.1 1.9e-20 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DIX 1/1 69 152 .. 1 87 [] 135.0 1.3e-36
Dishevelled 1/1 227 266 .. 30 74 .] 63.1 1.9e-20
PDZ 1/1 303 390 .. 1 84 [] 94.0 2.5e-25
DEP 1/1 510 561 .. 24 82 .] 73.2 5.6e-18
Alignments of top-scoring domains:
DIX: domain 1 of 1, from 69 to 152: score 135.0, E = 1.3e-36
*->csetKViYhLDdEetPYlvkvpvpaervTLgdFKevLtkrngsYKYy
+ tKV++h+DdE+ PY+ +v+vp++ +TLgd K+vL+++ ++KYy
C34F11.9a 69 HTMTKVYCHIDDETDPYMLEVHVPPDLITLGDLKRVLMRT--NFKYY 113
fKslDpDfdCgvVKeEirdDsarLrPcfNgrvvswLvsve<-*
K+lDpD + +VK+EirdDs+rL P+ N ++++L++ e
C34F11.9a 114 RKALDPDSG-YEVKAEIRDDSQRLTPSPNNLFELFLLTIE 152
Dishevelled: domain 1 of 1, from 227 to 266: score 63.1, E = 1.9e-20
*->pggrydsssslLsSEldstsffDsdeddtldRfSssTdqSSvSRL<-
+g+r+++++s+++SE+d+++f+D+d dR+S++Td++SvSR+
C34F11.9a 227 LGHRRHLEESTIGSESDARVFSDDD-----DRGSTTTDFTSVSRQ 266
*
C34F11.9a - -
PDZ: domain 1 of 1, from 303 to 390: score 94.0, E = 2.5e-25
*->evtlekevkrgglGfsikggsdk....givvsevlpGsgaAeagGrL
+v l ++ + ++lG+si+g++++ +++gi+v+++++G ga + +Gr+
C34F11.9a 303 TVNLNMD-TVNFLGISIVGQTSNcgdnGIYVANIMKG-GAVALDGRI 347
keGDvIlsvNGqdvenmsheravlaikgsgg..sevtLtvlRd<-*
++GD+Il+vN +++en++ ++av++++++++++++++Ltv+
C34F11.9a 348 EAGDMILQVNETSFENFTNDQAVDVLREAVSrrGPIKLTVAKS 390
DEP: domain 1 of 1, from 510 to 561: score 73.2, E = 5.6e-18
*->selVdWLmdnlsgvidrkeAlhlaqlLlkeGyirhvgdhltgkndht
s+lV+WL+d+++g+++rk A+++a++Llk++yi+hv +n+ t
C34F11.9a 510 SDLVEWLLDHVEGLRERKTARNFAADLLKLKYIAHV------VNKVT 550
FldkqtyYrfpd<-*
F++ q+yY+++d
C34F11.9a 551 FTE-QCYYVLGD 561