Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C34E10.6
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Query: C34E10.6 CE29950 locus:atp-2 ATP synthase beta chain status:Confirmed SW:P46561 protein_id:AAA19068.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ATP-synt_ab ATP synthase alpha/beta family, nucleot 288.4 9.2e-83 1
ATP-synt_ab_C ATP synthase alpha/beta chain, C termin 171.4 3.6e-48 1
ATP-synt_ab_N ATP synthase alpha/beta family, beta-ba 88.8 1.5e-28 1
RNA_helicase RNA helicase 8.3 0.29 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ATP-synt_ab_N 1/1 72 138 .. 1 69 [] 88.8 1.5e-28
RNA_helicase 1/1 213 242 .. 128 159 .. 8.3 0.29
ATP-synt_ab 1/1 235 420 .. 1 187 [] 288.4 9.2e-83
ATP-synt_ab_C 1/1 423 534 .. 1 147 [] 171.4 3.6e-48
Alignments of top-scoring domains:
ATP-synt_ab_N: domain 1 of 1, from 72 to 138: score 88.8, E = 1.5e-28
*->ivqviGpVvdVefgigrlpgiynalevelvefgklvlgvvlnLgddk
iv+viG+VvdV+f++ lp i+n lev + ++l+l+v ++Lgd++
C34E10.6 72 IVAVIGAVVDVQFDEN-LPPILNGLEVVGRS-PRLILEVSQHLGDNV 116
VrivvmgsTdGlkrGdeVkdTG<-*
Vr+++m++T+Gl+rG++V dTG
C34E10.6 117 VRCIAMDGTEGLVRGQPVADTG 138
RNA_helicase: domain 1 of 1, from 213 to 242: score 8.3, E = 0.29
*->lhGaPGqGKSllanvlaralskhlggpedsvY<-*
l G +G+GK++l l++ ++k +g ++sv+
C34E10.6 213 LFGGAGVGKTVLIMELINNVAKAHG--GYSVF 242
ATP-synt_ab: domain 1 of 1, from 235 to 420: score 288.4, E = 9.2e-83
*->eeadvvVyvlIGeRgrEvaefveelleegalktg.lm.rtvlVaata
+++++V++++GeR+rE++++++e+ e g+++ + +++ lV++++
C34E10.6 235 AHGGYSVFAGVGERTREGNDLYHEMIEGGVIDLKgKNsKVSLVYGQM 281
depallRylapytattiAEYFrd.qGkdVLliiDsltRfAqAlREiSlll
+ep+++R ++ t++t+AEYFrd++G+dVLl+iD+++Rf+qA++E+S+ll
C34E10.6 282 NEPPGARARVCLTGLTVAEYFRDqEGQDVLLFIDNIFRFTQAGSEVSALL 331
gepPgreGYPpdvfyllsrLlERAGklsdeggkGSITalptVltegdDis
g++P+++GY+p++ +++++ +ER++ ++kGSIT+++++++++dD++
C34E10.6 332 GRIPSAVGYQPTLATDMGSMQERIT----TTKKGSITSVQAIYVPADDLT 377
dPipdnvisItDGqIvLsreLaerGiyPAIdvllSvSRvgsaa<-*
dP+p ++++++D+++vLsr +ae iyPA+d+l+S+SR++++
C34E10.6 378 DPAPATTFAHLDATTVLSRGIAELAIYPAVDPLDSTSRIMDPN 420
ATP-synt_ab_C: domain 1 of 1, from 423 to 534: score 171.4, E = 3.6e-48
*->gkahkqVagklkleLaqyrELqafaQlvGsDeLseeDKltQQLerAr
g+ h++ a++++ +L+ y+ Lq++++++G+DeLseeDKlt + rAr
C34E10.6 423 GQNHYDIARGVQKILQDYKSLQDIIAILGMDELSEEDKLT--VSRAR 467
rieedfLkQnqyspeDvFcpvekqyvsLrnIiFYdeAqkAleGvtlnkIv
+i++ fL+Q++ ++e vF++ ++++vs +
C34E10.6 468 KIQR-FLSQPFQVAE-VFTGHQGKFVS----------------------L 493
eetidlfyallrGklddlpedalekigtidiakykalnkellekakkllk
eeti++f ++l+G+ld+lpe a+++ g+id++ +ka++l k
C34E10.6 494 EETIRGFTMILKGELDHLPEVAFYMQGGIDDV---------FKKAEELAK 534
<-*
C34E10.6 - -