Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C33C12.3
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Query:  C33C12.3  CE29208   glucosylceramidase status:Partially_confirmed TR:O16580 protein_id:AAB66056.2

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Glyco_hydro_30  O-Glycosyl hydrolase family 30         1340.0          0   1
Glyco_hydro_59  Glycosyl hydrolase family 59              8.0      0.061   1
MHCK_EF2_kinase MHCK/EF2 kinase domain family             1.7        5.1   1
DUF19           Domain of unknown function DUF19          1.5        7.4   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
DUF19             1/1      26    42 ..     1    17 [.     1.5      7.4
Glyco_hydro_59    1/1     181   204 ..   118   141 ..     8.0    0.061
MHCK_EF2_kinase   1/1     385   403 ..     1    22 [.     1.7      5.1
Glyco_hydro_30    1/1      23   519 ..     1   545 []  1340.0        0

Alignments of top-scoring domains:
DUF19: domain 1 of 1, from 26 to 42: score 1.5, E = 7.4
                   *->CTevtslkatkClyrlg<-*
                      CTe+t+++ t C+ +l+
    C33C12.3    26    CTEKTFKTGTVCVCSLD    42

Glyco_hydro_59: domain 1 of 1, from 181 to 204: score 8.0, E = 0.061
                   *->mKEAKKRnPniiLmGLPWsFPGWl<-*
                      +K A+K nPn+ L   PW+ PGWl
    C33C12.3   181    IKNAQKYNPNLKLFAAPWAAPGWL    204

MHCK_EF2_kinase: domain 1 of 1, from 385 to 403: score 1.7, E = 5.1
                   *->ilwrydkGddstskWtqsevlv<-*
                      il+++++    ++ Wt++ +++
    C33C12.3   385    ILDNMNN---WMTGWTERNLIL    403

Glyco_hydro_30: domain 1 of 1, from 23 to 519: score 1340.0, E = 0
                   *->ArdCieKtFGktgvVCVCnltyCDeiDPpldlalGqaarYttsrsGa
                      A+dC+eKtF ktg+VCVC+l++CDei Ppld+++Gqaa+Ytts++Ga
    C33C12.3    23    AADCTEKTF-KTGTVCVCSLDSCDEI-PPLDITMGQAALYTTSHTGA 67

                   RlhrdvvyatanepltgLhlTidsskkyQtiqGFGstfsDAsgaNlksLp
                   Rlhrdv+yat++ep+++Lh+TidsskkyQtiqGFGstfsDAsgaNlksLp
    C33C12.3    68 RLHRDVIYATDTEPFGTLHMTIDSSKKYQTIQGFGSTFSDASGANLKSLP 117

                   dklqdliLkqYFSdeGlnlqfgRVPiAScDFSiRvYtYaDtadDyqlanF
                   dkl+dli+kqYFSd+GlnlqfgRVPiAS+DFS+RvY+Y+D+a+Dy+++nF
    C33C12.3   118 DKLSDLIMKQYFSDTGLNLQFGRVPIASTDFSGRVYSYNDVANDYSMQNF 167

                   sLpkEDtqwKIPyikrAqkynqrPlkLlAsPWtaPgWLKTtkavkGkGsL
                   +L+kED+qwKIPyik+Aqkyn++ lkL+A+PW+aPgWLKTtk+++G+G+L
    C33C12.3   168 NLTKEDFQWKIPYIKNAQKYNPN-LKLFAAPWAAPGWLKTTKEMTGPGAL 216

                   kGkagDiYHqtyarYfvkFLeeYaksgiqFWglstqNePtaGsdkkykiQ
                   +GkagD+YHq+ya+Yfv+FLeeY+ksgi+FWglstqN+Pt+Gsdkk+kiQ
    C33C12.3   217 NGKAGDNYHQAYAKYFVRFLEEYGKSGISFWGLSTQNQPTLGSDKKNKIQ 266

                   slgFTaEhQRDFIkrDlGPaLanStaGknVklLiLDDnRgnLPkWAdtVL
                   s++FTaE+QRDFIk+DlGPaLa+S++Gk+VklLiLDDnRgnLPkWAdtVL
    C33C12.3   267 STLFTAETQRDFIKTDLGPALAASSSGKDVKLLILDDNRGNLPKWADTVL 316

                   nDkdAAkYVsGIaVHaYqDfLaeadahLgeTHrkhPnvfifgtEAseGsk
                   nD+dAAkYV+GI+VHaYqD  +e+d+hL+eTH+khPn+fi+gtEAseG++
    C33C12.3   317 NDMDAAKYVGGIGVHAYQD--GETDNHLDETHKKHPNFFILGTEASEGYG 364

                   skdqsVdyGswDRaedyssdIldnrenivlkkflenwGkvrkknfkilif
                   skd++VdyG+wDRa+d++sdIldn
    C33C12.3   365 SKDTHVDYGNWDRAADTASDILDN-------------------------- 388

                   fsnfffhnfffyiffqnlnnwvtGWTerNLvLdaeGGPsWVsnFvDaPvI
                                    +nnw+tGWTerNL+Lda+GGPsWVs+++DaPvI
    C33C12.3   389 -----------------MNNWMTGWTERNLILDALGGPSWVSDYTDAPVI 421

                   afpalaqFYKQPMFYaiaHFShFikpGavRidhslnvknleleavAllnP
                   afpa+aqFYKQPMFYaiaHFShFikpGavRidhslnv++le+e++A+lnP
    C33C12.3   422 AFPAMAQFYKQPMFYAIAHFSHFIKPGAVRIDHSLNVIELEVETTAFLNP 471

                   DGSkVvVllNkssldvpeysltikDaaksrdHylvtlspkaiitlYiq<-
                   DGSkV+V+lNk+sl+++e++++++Daa+sr+Hy++tl+++ai+tlYiq
    C33C12.3   472 DGSKVIVMLNKGSLVSTEHTVVVQDAADSRNHYHFTLPHRAITTLYIQ   519

                   *

    C33C12.3     -   -



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