Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C33A11.1
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Query: C33A11.1 CE24824 Ank repeat status:Partially_confirmed TR:Q93318 protein_id:CAB01860.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ank Ankyrin repeat 84.1 3.7e-22 4
Chorion_2 Chorion family 2 4.1 5.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Chorion_2 1/1 184 195 .. 175 191 .] 4.1 5.5
ank 1/4 375 389 .. 1 15 [. 9.8 0.53
ank 2/4 417 449 .. 1 33 [] 31.6 3.3e-07
ank 3/4 452 485 .. 1 33 [] 18.7 0.0016
ank 4/4 486 530 .. 1 33 [] 23.9 5.3e-05
Alignments of top-scoring domains:
Chorion_2: domain 1 of 1, from 184 to 195: score 4.1, E = 5.5
*->DVPAgAGqLSYGyGqga<-*
D+ A+ +GyG+g+
C33A11.1 184 DISAY-----TGYGSGY 195
ank: domain 1 of 4, from 375 to 389: score 9.8, E = 0.53
*->dGnTPLHlAakrgnl<-*
dG+TPLH+ a +++l
C33A11.1 375 DGDTPLHIVAAHNDL 389
ank: domain 2 of 4, from 417 to 449: score 31.6, E = 3.3e-07
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
G+TPL +A++ ++evv++Ll+ GA++n +
C33A11.1 417 FGETPLYVAVLQRSIEVVEYLLELGASPNSRSS 449
ank: domain 3 of 4, from 452 to 485: score 18.7, E = 0.0016
*->dGnTPLHlAakrgnlevvklLlq.rGAdlnaqdd<-*
G++PLH A rg +++v+ Ll++r +n ++d
C33A11.1 452 VGDSPLHFATARGMNNMVEALLSkREIRVNETND 485
ank: domain 4 of 4, from 486 to 530: score 23.9, E = 5.3e-05
*->dGnTPLHlAakrg............nlevvklLlqrGAdlnaqdd<-
dG+T L +A+k+ + ++ + ++ +n++++++L+++GAd+ +
C33A11.1 486 DGQTSLLCAVKMHgmmdeqtqhkidNKSIIEMLIKAGADPTIAET 530
*
C33A11.1 - -