Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C32D5.11
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Query: C32D5.11 CE02527 status:Partially_confirmed TR:Q18355 protein_id:AAC46800.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 21.2 1.3e-06 1
Adeno_E4_34 Adenovirus early E4 34 kDa protein cons 5.2 2.7 1
DUF329 Domain of unknown function (DUF329) 4.2 9.4 1
Hemagglutinin Hemagglutinin -0.2 7.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Hemagglutinin 1/1 66 72 .. 561 567 .] -0.2 7.2
zf-C3HC4 1/1 68 109 .. 1 50 [] 21.2 1.3e-06
DUF329 1/1 102 114 .. 1 17 [. 4.2 9.4
Adeno_E4_34 1/1 535 583 .. 112 165 .] 5.2 2.7
Alignments of top-scoring domains:
Hemagglutinin: domain 1 of 1, from 66 to 72: score -0.2, E = 7.2
*->crCtICI<-*
++CtIC+
C32D5.11 66 LQCTICL 72
zf-C3HC4: domain 1 of 1, from 68 to 109: score 21.2, E = 1.3e-06
*->CrICleelkepsndfplilpCgHsGslkyfCrsClerWls...gntt
C ICl + + + i C+Hs fC+sC+++W+ ++ +++
C32D5.11 68 CTICLSTRFSQE---CRIEGCNHS-----FCFSCISEWVCqslRPS- 105
vkCplC<-*
Cp+C
C32D5.11 106 --CPMC 109
DUF329: domain 1 of 1, from 102 to 114: score 4.2, E = 9.4
*->ltvkrqvKCPtCgkpVe<-*
l++ CP C k+V+
C32D5.11 102 LRPS----CPMCRKDVD 114
Adeno_E4_34: domain 1 of 1, from 535 to 583: score 5.2, E = 2.7
*->llrralnlidkrstvrkqqFtelpvvdhikrsrtErrRQrlLrrlmm
+lr+a + +d+ + ++ e p+ ++++ r+E +R+rlL+r+ +
C32D5.11 535 TLRSAMRRLDSDRPTD----EEIPPIESRPQTRREIERDRLLQRVRE 577
ygrpilf<-*
++++
C32D5.11 578 -FDNRSR 583