Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C32D5.10
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Query: C32D5.10 CE29688 status:Partially_confirmed SW:Q09268 protein_id:AAC46798.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 27.8 5.1e-09 1
chromo 'chromo' (CHRromatin Organization MOd 9.6 0.26 1
Transglutamin_N Transglutaminase family 6.5 1 1
FYVE FYVE zinc finger 4.5 7.8 1
Peptidase_M16_C Peptidase M16 inactive domain 3.5 8.9 1
zf-MIZ MIZ zinc finger 3.2 7.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-C3HC4 1/1 41 81 .. 1 50 [] 27.8 5.1e-09
zf-MIZ 1/1 77 87 .. 43 53 .] 3.2 7.4
FYVE 1/1 67 91 .. 1 26 [. 4.5 7.8
Peptidase_M16_C 1/1 272 302 .. 166 197 .] 3.5 8.9
Transglutamin_N 1/1 348 368 .. 1 21 [. 6.5 1
chromo 1/1 484 502 .. 1 20 [. 9.6 0.26
Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 41 to 81: score 27.8, E = 5.1e-09
*->CrICleelkepsndfplilpCgHsGslkyfCrsClerWls...gntt
C +C++e + + ++ C H fC++C++ Wl +++g++
C32D5.10 41 CSVCKNEIIDTT----SLSDCCHE-----FCYDCIVGWLTkgsGPF- 77
vkCplC<-*
Cp+C
C32D5.10 78 --CPMC 81
zf-MIZ: domain 1 of 1, from 77 to 87: score 3.2, E = 7.4
*->rCPvCnknaky<-*
+CP C ++++
C32D5.10 77 FCPMCKTPVSF 87
FYVE: domain 1 of 1, from 67 to 91: score 4.5, E = 7.8
*->phWvpDeevsnCmrCgkpFtkltkRr<-*
+ W+ + +C++C++p + +++R+
C32D5.10 67 VGWLTKGSGPFCPMCKTPVS-FIQRK 91
Peptidase_M16_C: domain 1 of 1, from 272 to 302: score 3.5, E = 8.9
*->eeRvlelileeleklaeeGiteeeleraknql<-*
ee +++ i++ +e+ + ++++ e+++a n+l
C32D5.10 272 EE-IINRIFSMIEDRGTRDLNAREVDAALNGL 302
Transglutamin_N: domain 1 of 1, from 348 to 368: score 6.5, E = 1
*->seelvvesvdlekdeNrreHH<-*
++++v++s++le +eNr H+
C32D5.10 348 DVVTVDDSIELEPEENRSNHR 368
chromo: domain 1 of 1, from 484 to 502: score 9.6, E = 0.26
*->eeeyvVEkdDPniIldhrvk<-*
ee++vVE+ D iIld +++
C32D5.10 484 EEIQVVER-DDTIILDDSNR 502