Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C30G4.7
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Query: C30G4.7 CE27806 status:Confirmed TR:Q95ZX8 protein_id:AAK68211.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TSC22 TSC-22/dip/bun family 79.8 1.5e-24 1
LRR Leucine Rich Repeat 6.3 6.3 1
Pox_A_type_inc Viral A-type inclusion protein repeat 6.3 5.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pox_A_type_inc 1/1 72 94 .. 1 23 [] 6.3 5.6
LRR 1/1 87 111 .. 1 25 [] 6.3 6.3
TSC22 1/1 59 114 .] 1 56 [. 79.8 1.5e-24
Alignments of top-scoring domains:
Pox_A_type_inc: domain 1 of 1, from 72 to 94: score 6.3, E = 5.6
*->rEldrlRrrIsdLekqLsdcrrn<-*
+E+d lR +I dLe+ ++ + +
C30G4.7 72 EEVDGLRGKIFDLENHVRRLEAE 94
LRR: domain 1 of 1, from 87 to 111: score 6.3, E = 6.3
*->nLreLdLsgNnltgslppdafsgLt<-*
++r+L+ ++ l+ ++p+d+++ L+
C30G4.7 87 HVRRLEAENSILKRTIPNDTLKQLH 111
TSC22: domain 1 of 1, from 59 to 114: score 79.8, E = 1.5e-24
*->MDLVKsHLmyAVREEVEvLkeqIkeLveklnqLeeENtLLktnvSpE
MDLVK+HLm+AVREEV L+ +I +L+ + +Le EN++Lk ++
C30G4.7 59 MDLVKTHLMFAVREEVDGLRGKIFDLENHVRRLEAENSILKRTIPND 105
qLaqlqaql<-*
+L ql + l
C30G4.7 106 TLKQLHLKL 114