Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C29E6.2
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Query: C29E6.2 CE05333 ankyrin repeats status:Partially_confirmed TR:Q18297 protein_id:CAA96603.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ank Ankyrin repeat 299.9 3e-86 16
ion_trans Ion transport protein 70.6 5.6e-18 1
LRV Leucine rich repeat variant 11.6 0.75 1
DUF544 Protein of unknown function (DUF544) 5.7 2.7 1
GATase_2 Glutamine amidotransferases class-II 3.1 7.9 1
Bac_Ubq_Cox Bacterial Cytochrome Ubiquinol Oxidase 1.2 7.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ank 1/16 65 97 .. 1 33 [] 36.3 1.5e-08
ank 2/16 98 154 .. 1 33 [] 20.2 0.00058
ank 3/16 155 187 .. 1 33 [] 29.6 1.2e-06
ank 4/16 188 220 .. 1 33 [] 27.5 4.8e-06
ank 5/16 221 244 .. 1 24 [. 2.5 65
LRV 1/1 227 245 .. 5 24 .] 11.6 0.75
ank 6/16 259 281 .. 1 23 [. 3.5 34
ank 7/16 299 325 .. 7 33 .] 11.4 0.19
ank 8/16 330 359 .. 5 33 .] 20.1 0.00065
ank 9/16 360 392 .. 1 33 [] 33.5 9.4e-08
ank 10/16 393 425 .. 1 33 [] 1.9 97
ank 11/16 455 487 .. 1 33 [] 28.6 2.4e-06
ank 12/16 488 497 .. 1 10 [. 3.0 48
ank 13/16 517 549 .. 1 33 [] 34.0 7e-08
ank 14/16 550 582 .. 1 33 [] 16.5 0.0069
GATase_2 1/1 568 592 .. 131 156 .] 3.1 7.9
ank 15/16 585 614 .. 4 33 .] 20.0 0.0007
ank 16/16 615 649 .. 1 33 [] 11.2 0.22
Bac_Ubq_Cox 1/1 783 801 .. 115 133 .. 1.2 7.5
ion_trans 1/1 847 1045 .. 1 228 [] 70.6 5.6e-18
DUF544 1/1 1168 1184 .. 65 81 .. 5.7 2.7
Alignments of top-scoring domains:
ank: domain 1 of 16, from 65 to 97: score 36.3, E = 1.5e-08
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
d +TPLH+Aa++gn++ vklLl++ A +n +++
C29E6.2 65 DFMTPLHYAARYGNYDAVKLLLSKNALPNTKNR 97
ank: domain 2 of 16, from 98 to 154: score 20.2, E = 0.00058
*->dGnTPLHlAakrg........................nlevvklLlq
+G+TPLH+A+k++ + ++ + +++ ++ + ++ ++++ L++
C29E6.2 98 EGDTPLHIASKYIygysdicsiidedqadsarkyntaTKKIINALVS 144
rGAdlnaqdd<-*
A+++ +++
C29E6.2 145 ENAEIDPVNK 154
ank: domain 3 of 16, from 155 to 187: score 29.6, E = 1.2e-06
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+ TPLH+Aa++ n + + L++ Ad++a dd
C29E6.2 155 YQLTPLHYAAMKSNFSALHALIKLKADVDAEDD 187
ank: domain 4 of 16, from 188 to 220: score 27.5, E = 4.8e-06
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+ +TPL lA+ +g+ e+++ L+++ +++ +d
C29E6.2 188 NKMTPLLLACVHGSQEIIQELIKANSNVTKRDQ 220
ank: domain 5 of 16, from 221 to 244: score 2.5, E = 65
*->dGnTPLHlAakrgnlevvklLlqr<-*
+ nT H+ a+rg++e +++ +++
C29E6.2 221 RLNTVFHIVALRGEPEYLEMMMDH 244
LRV: domain 1 of 1, from 227 to 245: score 11.6, E = 0.75
*->aiVArRlppeaLerLlaDpD<-*
+iVA R +pe Le+++ D D
C29E6.2 227 HIVALRGEPEYLEMMM-DHD 245
ank: domain 6 of 16, from 259 to 281: score 3.5, E = 34
*->dGnTPLHlAakrgnlevvklLlq<-*
+ TPL +A++ +++e +k +lq
C29E6.2 259 EKKTPLRMAVEGNHPETLKKILQ 281
ank: domain 7 of 16, from 299 to 325: score 11.4, E = 0.19
*->HlAakrgnlevvklLlqrGAdlnaqdd<-*
H Aa++g lev+k L+++G + n +
C29E6.2 299 HFAAEKGFLEVLKALVEAGGNKNELNE 325
ank: domain 8 of 16, from 330 to 359: score 20.1, E = 0.00065
*->PLHlAakrgnlevvklLlq.rGAdlnaqdd<-*
PLH+Aa++++levv++L+++ +++++d
C29E6.2 330 PLHVAAQMNQLEVVSYLIEeEKDNIDVVDE 359
ank: domain 9 of 16, from 360 to 392: score 33.5, E = 9.4e-08
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
G TPL++A+ ++++++v++L+ + A+l ++d+
C29E6.2 360 QGLTPLMMAVTHDSKKCVEYLIAKKANLTITDK 392
[output cut off at A = 10 top alignments]