Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C27D8.1
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Query: C27D8.1 CE18539 serine\/threonine kinase status:Partially_confirmed TR:Q93288 protein_id:CAB05633.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 80.9 2.5e-21 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 24 176 .. 1 151 [. 80.9 2.5e-21
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 24 to 176: score 80.9, E = 2.5e-21
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkk.ekesikekrfl
y++++ lGeG+fG Vy++++ k++k+ A+K+ +k ek++ ++ +
C27D8.1 24 YTVVRLLGEGGFGAVYLVQDN-KSKKQSAMKVERKiEKRKHSK--LK 67
rEiqilkrLs.HpNIvrligvfed.tddhlylvmEymegGdLfdylrrng
+Ei+ilk + + ++ ++ + + ++ + lvmE++++ +L+d+ ++
C27D8.1 68 MEIAILKLVGsGKHFTQIVDRGKKdKEGFFFLVMELVGK-SLADLKADRP 116
.gplsekeakkialQilrGleYLHsngivHRDLKpeN..ILldendgtvK
+ ++s+ + + Q l+++e LH g++HRDLKp+N + lde+++++
C27D8.1 117 dKVFSFATGLGVSCQCLEAVEELHKTGFIHRDLKPQNyaCGLDEKRHNIY 166
iaDFGLArll<-*
i DFG+Ar++
C27D8.1 167 ILDFGIARKY 176