Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C26H9A.1
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Query: C26H9A.1 CE30882 locus:vha-7 status:Confirmed TN:CAB16306 protein_id:CAB16306.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
V_ATPase_sub_a V-type ATPase 116kDa subunit family 990.3 4.6e-294 1
Flagellar_rod Paraflagellar rod protein 10.1 0.077 1
Viral_Beta_CD Viral Beta C/D like family 3.4 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Flagellar_rod 1/1 96 152 .. 191 247 .. 10.1 0.077
Viral_Beta_CD 1/1 586 594 .. 125 133 .] 3.4 5.9
V_ATPase_sub_a 1/1 70 939 .. 1 876 [] 990.3 4.6e-294
Alignments of top-scoring domains:
Flagellar_rod: domain 1 of 1, from 96 to 152: score 10.1, E = 0.077
*->yKKekrlEeieRnirtthiqlEfAmEtlDPnakkhsdekkdlyelra
+K ++r Ee+eR+ r ++ q + lDP+ + d + +
C26H9A.1 96 VKQMRRCEEMERKLRFLEKQVITCKPGLDPKSIDYTDLSAPTQAEMI 142
gVeeeidmLk<-*
+ e ++d+L+
C26H9A.1 143 QLEHKLDQLE 152
Viral_Beta_CD: domain 1 of 1, from 586 to 594: score 3.4, E = 5.9
*->yPFGrspse<-*
yPFG++p +
C26H9A.1 586 YPFGVDPIW 594
V_ATPase_sub_a: domain 1 of 1, from 70 to 939: score 990.3, E = 4.6e-294
*->vsaLgelGlVqfrDlnedvsnaFqRkfvnevrRcdeverkLrylese
v+++g+ G Vqf Dln + s +R+fv++ rRc+e+erkLr+le++
C26H9A.1 70 VAEIGKHGNVQFVDLNAKMS-LYSRTFVKQMRRCEEMERKLRFLEKQ 115
ikklgiplksveldtgaqpdvpppkinyPpssselldleekleelEeeik
+ + +++ ld+++ ++ + p+ +e+++le kl+ lE+e
C26H9A.1 116 V--ITCKPG---LDPKSIDYTDLSA----PTQAEMIQLEHKLDQLEREFL 156
eveenlesLekelneLeewrnvLdetksffeenaddsGveeleasgdn..
+++ n +L+k+ln+ +e+++v + ++ff+ ++ + +
C26H9A.1 157 DLNNNDYALRKNLNSSKEFLQVMRLVDEFFQV-----------HKEEEak 195
..selsnlddefkalr....................ageylrlgsgasve
+ e+s d+ +++ ++ + ++ +++++ + ++ +++++
C26H9A.1 196 arFERSATTDDIEMFSksfgfgglpssnempltpllGSDDNAW------- 238
slstmeqlkakLdfvaGvinreklealeriLwralrgNlyirqaeieepl
fvaGv + +k e++er+Lwra+r ++++r+++ + +
C26H9A.1 239 -------------FVAGVLPLDKKESFERVLWRACRRTAFVRTSDASFTV 275
eDpkTGEpvhktvfiiffvgkeildkvkkIlesfgfelydvpetegerse
+Dp+T Ep k+vfi+ff+g+ ++ v+k++++f+++ y++p+ ++ r+
C26H9A.1 276 NDPVTLEPLQKCVFIVFFKGESLRLIVEKVCDGFNATQYPCPKSSKDRKM 325
llskvnkriedlqtvLeqteshlekvlakiadellawdeqvskeKavyet
+ s+ + r dl+ v+++t+ h++++l + e++ w + + ++K+v+ +
C26H9A.1 326 KMSETEGRMNDLTVVIDTTQTHRYTILKDMSFEIPIWLKNIQIQKSVFAV 375
lnlfnydvtrkcliaeGWvPakdleklqsaLenategsgslvpsilndie
+n+f +d++ +l e+W+Pa++ ++++ aL ++ +sg +v iln++
C26H9A.1 376 MNMFTVDTN-GFLAGECWIPAAEEDDVRQALHDGFKASGTEVEPILNELW 424
tnetPPTylktnkFtapFQmIvdaYGipkYrEvnPapftiiTFPFlFGvM
tn PPT+++tnkFt+ FQ+Ivd+YG+ +Y EvnPap+tiiTFPFlF+vM
C26H9A.1 425 TNAPPPTFHRTNKFTNVFQSIVDSYGVSQYCEVNPAPYTIITFPFLFAVM 474
fGDiGyGllmfliALlLvllekklgakkikdEIfqMfFkgryIlllmGvF
fGD+++G++++l+AL+++++e+k++ kki+dEIf++f +gryI++lmG+F
C26H9A.1 475 FGDAAHGAILLLAALFFIRNERKIESKKIRDEIFNTFYGGRYIMMLMGIF 524
SIytGfiYNdcFgkslniFgsgwkwpamasvie.Wsd.tiksge..tltl
SIytGf+YNd F ks+n Fgsgw++++++ + + W+ + +++++ +l+l
C26H9A.1 525 SIYTGFLYNDAFAKSFNVFGSGWSNSYNETQLDwWIArSYRKHReySLEL 574
apsvggvf.gGpYPfgidpiwngaeNkLlFlNSykmklSiilGviHmtfG
+p + ++ +YPfg+dpiwn+a+N+L+FlNS+kmk S+i+G+ +mtfG
C26H9A.1 575 VPEKS-FDiEKTYPFGVDPIWNIADNRLSFLNSMKMKASVIIGITQMTFG 623
lflgffNhvkfkskidikgafipqlifllsIfGYLvilIiYKWlvdwakt
+fl++ Nh++fks idi+ +fipq ifl +If YL+i+Ii KW ++++
C26H9A.1 624 VFLSVLNHIHFKSYIDIISNFIPQVIFLSCIFIYLCIQIIVKWIFFSVNA 673
gtvlGy.YPGskpaPslLigLInMFLfpgRNAGFTlDdGk....CYLsqL
+ v+G++YPGs++aPslLigLInMF+f+ RN G+ + G+ ++C L +
C26H9A.1 674 ENVFGFeYPGSHCAPSLLIGLINMFMFKKRNEGYLNENGEvysnCHLGYW 723
YPGQavvQviLvvlalacvPvlLlgkplflmregkkrkkgGhrhGyirvg
YP Q v++iL+ + lac+P++L+gkpl +++ +kr
C26H9A.1 724 YPNQRLVETILISISLACIPIMLFGKPLWVRFVTSKR------------H 761
.v..................................ereresaqqeeese
+ +++++ ++ ++++++ + ++++ + ++++ ++ e + +++
C26H9A.1 762 kLqenkslkslrrngttvsaptspvvdagpprfedaELLLADELD----- 806
dlgnqdeesvasaldaeeeevGggehEefefGevmihQvIhtIefcLGcv
++ d+ + s ++++hQ+IhtIef+LGcv
C26H9A.1 807 --IGEDIHHSLS--------------------DIFVHQAIHTIEFVLGCV 834
ShTaSYlRLwALsLAhaqLSsVlwtMvirigf........esigsagvgv
ShTaSYlRLwALsLAhaqLS+V w+Mv+ g ++ ++ ++e i+ + +
C26H9A.1 835 SHTASYLRLWALSLAHAQLSEVMWHMVLIQGIhtvdhienETIA-MCLKP 883
ialvvvfaivfvlghailliMegLSAfLHaLRLHwVEFfsKFYeGgGrkF
+++ v+f+i++ l+ il++MegLSAfLHaLRLHwVEF+sKFY G+G +F
C26H9A.1 884 VVACVAFFIFASLSLSILIMMEGLSAFLHALRLHWVEFQSKFYLGTGHPF 933
ePFsfk<-*
F k
C26H9A.1 934 HAFYLK 939