Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C26G2.1
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Query: C26G2.1 CE19703 Immunoglobulin domain \; Fibronectin type III domain status:Partially_confirmed TR:Q9U3P2 protein_id:CAB63432.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ig Immunoglobulin domain 138.8 9.8e-38 8
fn3 Fibronectin type III domain 46.2 7e-12 1
PKD PKD domain 9.0 0.11 1
Mid2 Mid2 like cell wall stress sensor 3.5 7.9 1
Tissue_fac Tissue factor 3.5 5.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ig 1/8 33 106 .. 1 50 [] 31.0 6.3e-07
Tissue_fac 1/1 143 151 .. 293 301 .] 3.5 5.1
ig 2/8 145 211 .. 1 50 [] 16.5 0.0065
ig 3/8 249 310 .. 1 50 [] 31.2 5.7e-07
Mid2 1/1 357 370 .. 1 15 [. 3.5 7.9
ig 4/8 345 412 .. 1 50 [] 13.0 0.061
ig 5/8 447 474 .. 1 26 [. 5.9 5.7
ig 6/8 599 620 .. 1 21 [. 5.0 10
PKD 1/1 760 778 .. 80 99 .] 9.0 0.11
ig 7/8 796 852 .. 1 50 [] 32.6 2.3e-07
ig 8/8 888 955 .. 1 50 [] 4.2 16
fn3 1/1 974 1056 .. 1 84 [] 46.2 7e-12
Alignments of top-scoring domains:
ig: domain 1 of 8, from 33 to 106: score 31.0, E = 6.3e-07
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le.................
Ges t++Cs+ ++ p + +W++n ++l + ++++ ++++++ +
C26G2.1 33 GESITFRCSAEKSPEPiVySQWKSNTGsLLgyhqegilpghqgrfsy 79
....tsslslti.svtpeDsgGtYtCvv<-*
+++ l+l i+ v+ +D+ G+Y C+
C26G2.1 80 ikqnAEELHLKItHVNLDDD-GEYECQM 106
Tissue_fac: domain 1 of 1, from 143 to 151: score 3.5, E = 5.1
*->KEntPlnvA<-*
KEntPln+
C26G2.1 143 KENTPLNIT 151
ig: domain 2 of 8, from 145 to 211: score 16.5, E = 0.0065
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le..............tss
+ ++++tC v p+p+v W+ +gk + ++ ++ ++++ +++ +
C26G2.1 145 NTPLNITCVVP-NVKPePeVLWYMDGKvMSrdvkqastphlnktFTV 190
lslti.svtpeDsgGtYtCvv<-*
++ ++ ++D+g + tC++
C26G2.1 191 YTSLVvQSDRNDHGKVITCEA 211
ig: domain 3 of 8, from 249 to 310: score 31.2, E = 5.7e-07
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le.........tsslslti
G+ vt+ Csv+ +g+p+p+v+W++++k+l+++++ ++++ + ++
C26G2.1 249 GDNVTIACSVT-GGNPpPdVFWYHENKrLQshstldtrsKEIKNIYS 294
.svtpeDsgGtYtCvv<-*
++++D+ ++Y C++
C26G2.1 295 fIASQNDNMAEYECRA 310
Mid2: domain 1 of 1, from 357 to 370: score 3.5, E = 7.9
*->ayNlakTITSIIeGk<-*
+N a+ IT II+G+
C26G2.1 357 -SNPASQITWIINGR 370
ig: domain 4 of 8, from 345 to 412: score 13.0, E = 0.061
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le...............ts
G+s++++C + ++p ++tW ng++++++++++ +++ ++s
C26G2.1 345 GSSANIQCKSL-PSNPaSqITWIINGRsVPtptqrefvvengivsSS 390
slslti.svtpeDsgGtYtCvv<-*
++s++ + ++ e + + C++
C26G2.1 391 NVSVHSnELSVEAHQINVECMA 412
ig: domain 5 of 8, from 447 to 474: score 5.9, E = 5.7
*->GesvtLtCsvsgfgpp.p.vtWlrngk.l<-*
G+ v+ tC++ +g+p ++++W+r+++++
C26G2.1 447 GDIVNVTCEAQ-GGNPlAeLSWYRGSEkH 474
ig: domain 6 of 8, from 599 to 620: score 5.0, E = 10
*->GesvtLtCsvsgfgpp.p.vtWl<-*
G s++L+C +++p ++++W+
C26G2.1 599 GKSARLVCGTL-SSNPaAhISWQ 620
PKD: domain 1 of 1, from 760 to 778: score 9.0, E = 0.11
*->tLtvsNgvgsasattttvtV<-*
tLt++N+vgs++ t + + V
C26G2.1 760 TLTATNSVGSTNIT-IKLAV 778
ig: domain 7 of 8, from 796 to 852: score 32.6, E = 2.3e-07
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le.....tsslslti.svt
G++v L C++ g+ ++ ++W++ng+ l +++++ + l+++ ++
C26G2.1 796 GDTVLLECEADGEPSKaNmIHWYKNGEiLAaqhrgHKKAILRLnATE 842
peDsgGtYtCvv<-*
+ G+YtC +
C26G2.1 843 QQS--GEYTCKA 852
[output cut off at A = 10 top alignments]