Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C26G2.1
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Query:  C26G2.1  CE19703   Immunoglobulin domain \; Fibronectin type III domain status:Partially_confirmed TR:Q9U3P2 protein_id:CAB63432.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
ig         Immunoglobulin domain                        138.8    9.8e-38   8
fn3        Fibronectin type III domain                   46.2      7e-12   1
PKD        PKD domain                                     9.0       0.11   1
Mid2       Mid2 like cell wall stress sensor              3.5        7.9   1
Tissue_fac Tissue factor                                  3.5        5.1   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
ig           1/8      33   106 ..     1    50 []    31.0  6.3e-07
Tissue_fac   1/1     143   151 ..   293   301 .]     3.5      5.1
ig           2/8     145   211 ..     1    50 []    16.5   0.0065
ig           3/8     249   310 ..     1    50 []    31.2  5.7e-07
Mid2         1/1     357   370 ..     1    15 [.     3.5      7.9
ig           4/8     345   412 ..     1    50 []    13.0    0.061
ig           5/8     447   474 ..     1    26 [.     5.9      5.7
ig           6/8     599   620 ..     1    21 [.     5.0       10
PKD          1/1     760   778 ..    80    99 .]     9.0     0.11
ig           7/8     796   852 ..     1    50 []    32.6  2.3e-07
ig           8/8     888   955 ..     1    50 []     4.2       16
fn3          1/1     974  1056 ..     1    84 []    46.2    7e-12

Alignments of top-scoring domains:
ig: domain 1 of 8, from 33 to 106: score 31.0, E = 6.3e-07
                   *->GesvtLtCsvsgfgpp.p.vtWlrngk.le.................
                      Ges t++Cs+ ++  p +  +W++n ++l + ++++  ++++++ +
     C26G2.1    33    GESITFRCSAEKSPEPiVySQWKSNTGsLLgyhqegilpghqgrfsy 79

                   ....tsslslti.svtpeDsgGtYtCvv<-*
                    +++   l+l i+ v+ +D+ G+Y C+
     C26G2.1    80 ikqnAEELHLKItHVNLDDD-GEYECQM    106

Tissue_fac: domain 1 of 1, from 143 to 151: score 3.5, E = 5.1
                   *->KEntPlnvA<-*
                      KEntPln+
     C26G2.1   143    KENTPLNIT    151

ig: domain 2 of 8, from 145 to 211: score 16.5, E = 0.0065
                   *->GesvtLtCsvsgfgpp.p.vtWlrngk.le..............tss
                      + ++++tC v     p+p+v W+ +gk + ++ ++ ++++ +++ +
     C26G2.1   145    NTPLNITCVVP-NVKPePeVLWYMDGKvMSrdvkqastphlnktFTV 190

                   lslti.svtpeDsgGtYtCvv<-*
                   ++ ++    ++D+g + tC++
     C26G2.1   191 YTSLVvQSDRNDHGKVITCEA    211

ig: domain 3 of 8, from 249 to 310: score 31.2, E = 5.7e-07
                   *->GesvtLtCsvsgfgpp.p.vtWlrngk.le.........tsslslti
                      G+ vt+ Csv+ +g+p+p+v+W++++k+l+++++ ++++  + ++
     C26G2.1   249    GDNVTIACSVT-GGNPpPdVFWYHENKrLQshstldtrsKEIKNIYS 294

                   .svtpeDsgGtYtCvv<-*
                     ++++D+ ++Y C++
     C26G2.1   295 fIASQNDNMAEYECRA    310

Mid2: domain 1 of 1, from 357 to 370: score 3.5, E = 7.9
                   *->ayNlakTITSIIeGk<-*
                       +N a+ IT II+G+
     C26G2.1   357    -SNPASQITWIINGR    370

ig: domain 4 of 8, from 345 to 412: score 13.0, E = 0.061
                   *->GesvtLtCsvsgfgpp.p.vtWlrngk.le...............ts
                      G+s++++C +   ++p  ++tW  ng++++++++++   +++  ++s
     C26G2.1   345    GSSANIQCKSL-PSNPaSqITWIINGRsVPtptqrefvvengivsSS 390

                   slslti.svtpeDsgGtYtCvv<-*
                   ++s++ + ++ e +  +  C++
     C26G2.1   391 NVSVHSnELSVEAHQINVECMA    412

ig: domain 5 of 8, from 447 to 474: score 5.9, E = 5.7
                   *->GesvtLtCsvsgfgpp.p.vtWlrngk.l<-*
                      G+ v+ tC++  +g+p ++++W+r+++++
     C26G2.1   447    GDIVNVTCEAQ-GGNPlAeLSWYRGSEkH    474

ig: domain 6 of 8, from 599 to 620: score 5.0, E = 10
                   *->GesvtLtCsvsgfgpp.p.vtWl<-*
                      G s++L+C    +++p ++++W+
     C26G2.1   599    GKSARLVCGTL-SSNPaAhISWQ    620

PKD: domain 1 of 1, from 760 to 778: score 9.0, E = 0.11
                   *->tLtvsNgvgsasattttvtV<-*
                      tLt++N+vgs++ t + + V
     C26G2.1   760    TLTATNSVGSTNIT-IKLAV    778

ig: domain 7 of 8, from 796 to 852: score 32.6, E = 2.3e-07
                   *->GesvtLtCsvsgfgpp.p.vtWlrngk.le.....tsslslti.svt
                      G++v L C++ g+ ++   ++W++ng+ l  +++++  + l+++ ++
     C26G2.1   796    GDTVLLECEADGEPSKaNmIHWYKNGEiLAaqhrgHKKAILRLnATE 842

                   peDsgGtYtCvv<-*
                   +    G+YtC +
     C26G2.1   843 QQS--GEYTCKA    852

	[output cut off at A = 10 top alignments]


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