Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C26E6.11
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Query: C26E6.11 CE01159 status:Partially_confirmed TR:Q18218 protein_id:AAA21165.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF80 Protein of unknown function DUF80 385.5 5.2e-112 1
GatB PET112 family, C terminal region 5.6 2.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF80 1/1 134 310 .. 1 180 [] 385.5 5.2e-112
GatB 1/1 307 322 .. 1 30 [. 5.6 2.7
Alignments of top-scoring domains:
DUF80: domain 1 of 1, from 134 to 310: score 385.5, E = 5.2e-112
*->iyTrGRGTGDkGtTgLfggsRvdKDdlrveAyGtiDElnSFIGvAla
++++GRGTGD+G+++L++++R++KDd++++A+G++DEl+SF+Gv++a
C26E6.11 134 GFKQGRGTGDSGQSSLYNNERRWKDDDTFNALGATDELSSFLGVCGA 180
llkpdgsdedlretLleIQndLFdvGAeLAsdkVknlerkkqkiseedIe
++++dgs++d++etL+++Q++L+dvGA+LA+++ kn++++kqk++++dI+
C26E6.11 181 SAQNDGSMSDVVETLTRLQCCLQDVGAHLATPP-KNSSERKQKKTAFDIA 229
wLEelNAEIDrYeaevpplKsFVLPGgslsSAqLhVARTvvRRAERsvva
++E++NAEIDrY++++p++++F+L+Gg+++SAqL+++R+++RRAERs+v+
C26E6.11 230 MVEWINAEIDRYGDALPAIRQFILSGGGMTSAQLQYSRAICRRAERSIVP 279
lmreekvrkevlPAkYLNRLSDlLFilaRveet<-*
lmr+e+v++++l k+LNR+SDlLF+l+R++++
C26E6.11 280 LMRDEDVDPMAL--KFLNRMSDLLFVLGRTACM 310
GatB: domain 1 of 1, from 307 to 322: score 5.6, E = 2.7
*->TvsmRtKEeaeGVPEETRkALeDGnTYLRP<-*
T mR+K e+ TYLRP
C26E6.11 307 TACMRNKNEEL--------------TYLRP 322