Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C24G6.2a
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Query: C24G6.2a CE17457 protein kinase status:Partially_confirmed TR:O76385 protein_id:AAC19210.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 252.4 6.3e-72 1
fn3 Fibronectin type III domain 19.9 0.00028 1
Herpes_glycop_D Herpesvirus glycoprotein D 14.0 0.0086 1
DUP DUP family 11.8 0.052 1
OadB_MmdB Na+-transporting methylmalonyl-CoA/ox 3.1 2.4 1
CorA CorA-like Mg2+ transporter protein 2.1 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
fn3 1/1 84 164 .. 1 84 [] 19.9 0.00028
Herpes_glycop_D 1/1 466 502 .. 358 399 .. 14.0 0.0086
OadB_MmdB 1/1 479 502 .. 1 24 [. 3.1 2.4
CorA 1/1 480 504 .. 370 398 .] 2.1 9.7
DUP 1/1 464 509 .. 1 49 [. 11.8 0.052
pkinase 1/1 543 837 .. 1 288 [. 252.4 6.3e-72
Alignments of top-scoring domains:
fn3: domain 1 of 1, from 84 to 164: score 19.9, E = 0.00028
*->PsaPtnltvtdvtstsltlsWspptgngpitgYevtyRqpkngge..
++aPtnlt ++v+ lsWsp g + +Y yR + n+ +
C24G6.2a 84 LPAPTNLTLKGVRG----LSWSPV--PGAVMYYIG-YR-TLNSKTft 122
..wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
++++ +t + t + tlt+ P +e ev V+A +++G G eS
C24G6.2a 123 sdDFVITEKQTVDLSTLTNIDPCSELEVAVAAFSEDGiGNES 164
Herpes_glycop_D: domain 1 of 1, from 466 to 502: score 14.0, E = 0.0086
*->atpaNpdakvtsviigivvlalligaiivgvvyyilrRrRke<-*
+t++N +++ iigiv+++l +++++ vv++ ++R+++e
C24G6.2a 466 HTSNN----PVGMIIGIVIGSLVVILVAI-VVIWFYFRKKSE 502
OadB_MmdB: domain 1 of 1, from 479 to 502: score 3.1, E = 2.4
*->tlGqivMilVGllLlYLaIvKkfE<-*
+G++v ilV+++ ++ +Kk+E
C24G6.2a 479 VIGSLVVILVAIVVIWFYFRKKSE 502
CorA: domain 1 of 1, from 480 to 504: score 2.1, E = 9.7
*->plvlglmailclvlylvllsyfrrKgwlg<-*
+++l+++++ +v+++ yfr+K +
C24G6.2a 480 IGSLVVILVAIVVIWF----YFRKKSENM 504
DUP: domain 1 of 1, from 464 to 509: score 11.8, E = 0.052
*->ivlfinvsrcllvllvvslflvliflllvvifqnsryislkvkmefk
++++ n+ ++ ++ +v+ lv+i++ +vvi++++r +s++ m+fk
C24G6.2a 464 VAHTSNNPVGM-IIGIVIGSLVVILVAIVVIWFYFRKKSEN--MKFK 507
mQ<-*
+Q
C24G6.2a 508 FQ 509
pkinase: domain 1 of 1, from 543 to 837: score 252.4, E = 6.3e-72
*->yelleklGeGsfGkVykakhkd..................ktgkiVA
++ +klG+G+fG Vy++k++ ++ +++ +++ + + + +++VA
C24G6.2a 543 IHNDKKLGSGAFGAVYLGKLIGkslahkdansplginlmrAENCQVA 589
vKilkkekesikek..rflrEiqilkrLs.HpNIvrligvfedtddhlyl
vK+l+ + ++ ++ flrEi+++k+L H+ +v+++ ++ ++++l+l
C24G6.2a 590 VKMLP--EYADEMSkhEFLREIALMKTLGyHERLVNMLACVT-ESEPLCL 636
vmEymegGdLfdylrrng.........................gplseke
v Ey+++GdL+++lr++ + + ++ + + ++++++++ +++ + k+
C24G6.2a 637 VVEYCDNGDLLKFLRERCkymmklddlginyhdppenenydtnMIVTLKQ 686
akkialQilrGleYLHsngivHRDLKpeNILldendgtvKiaDFGLArll
++ +a Qi GleYL +g+vHRD++++N+L++e +Ki+DFGL+r +
C24G6.2a 687 LLQFAVQISYGLEYLSQKGFVHRDVAARNVLVHEG-TACKIGDFGLCRYI 735
e...sssklttfvGTpwYmmAPEvilegrgysskvDvWSlGviLyElltg
+ ++s++k +++ + +m +PE ++ ++s k+D+WS+G++L+E+ t
C24G6.2a 736 YadqSQYKSKGGKLPLKWM-SPEA-IRHYEFSIKSDIWSFGILLFEVITL 783
gplfpgadlpaftggdevdqliifvlklPfsdelpktridpleelfriik
g ++P+++ +p e ++ ++
C24G6.2a 784 G-------------------------GSPYPG-------MPPEDVLPFLE 801
rpglrlplpsncSeelkdLlkkcLnkDPskRpGsatakei<-*
+ g+r+++p+nc+e+++d++ +c+n DP +R+ + ++
C24G6.2a 802 G-GGRIEKPDNCPENFYDVMMQCWNADPDDRI---EFSDV 837