Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C24B9.3
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Query: C24B9.3 CE29672 status:Confirmed TR:O76430 protein_id:AAC19251.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
vwa von Willebrand factor type A domain 122.2 2e-37 2
annexin Annexin 6.2 5 1
APG6 Autophagy protein Apg6 2.0 8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
APG6 1/1 57 69 .. 399 411 .] 2.0 8
annexin 1/1 135 145 .. 58 68 .] 6.2 5
vwa 1/2 35 214 .. 1 189 [] 100.4 1.4e-30
vwa 2/2 251 294 .. 1 46 [. 26.0 3e-07
Alignments of top-scoring domains:
APG6: domain 1 of 1, from 57 to 69: score 2.0, E = 8
*->WglAwvSsqflks<-*
++l++vSs+ +++
C24B9.3 57 FLLNFVSSLTVSP 69
annexin: domain 1 of 1, from 135 to 145: score 6.2, E = 5
*->SGdfeklLlaL<-*
SGd++k+L+ L
C24B9.3 135 SGDYKKVLVIL 145
vwa: domain 1 of 2, from 35 to 214: score 100.4, E = 1.4e-30
*->DivFllDgSgSigeenrFekvkdfvkklveknldigpdgtrvglvqy
Div+++D+S+ ++ Fe++++f+ ++v+ +l+++p + +v+l y
C24B9.3 35 DIVIVVDASNAYDQVT-FEQIRTFLLNFVS-SLTVSPLDSQVALYAY 79
ssdvrtefsLndytskddllaailknlrylgGgTnNtgkALkyalenlfs
+s ++t++sLnd +s ++++a+i+ l+y g N+ +AL ++ ++ s
C24B9.3 80 GSSAQTVASLNDGSSLGSIQAKINTTLKYQGSAERNLFQALTKVQAEVSS 129
stMlkngraagsRpenapkvlillTDGksndgpdve.aaaalrrk...gi
+ ++++ +++kvl++l+ +++++ + + ++ + +++ + i
C24B9.3 130 M-------SGMRSG-DYKKVLVILSGDSWTGNTVIGsSVLTQLKQkfnVI 171
ivfavGvdadeeeLr.iasepeseghvfyvedfddlwlqlkdlqeal<-*
+++G a + ++ ++++ ++ f+ +++d+l+ + + +
C24B9.3 172 MSVGFGAKALANLNSqLPQITTATTNTFFAATSDQLT----YVSAWM 214
vwa: domain 2 of 2, from 251 to 294: score 26.0, E = 3e-07
*->DivFllDgSgSigeenrFekvkdfvkklveknldigpdgtrvglvq<
D+++++D+S+ + ++ F +k++++++v + ig gt ++lv+
C24B9.3 251 DVYLIVDVSNKASAAD-FAAMKTAIHNFVA-PFAIGDLGTSFALVT 294
-*
C24B9.3 - -