Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C18E3.7a
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Query: C18E3.7a CE27715 status:Partially_confirmed
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Piwi Piwi domain 433.4 2e-126 1
PAZ PAZ domain 151.8 2e-42 1
DUF328 Protein of unknown function (DUF328) 6.8 0.9 1
DUF305 Domain of unknown function 5.8 3.5 1
PAC PAC motif 5.4 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PAC 1/1 90 108 .. 1 19 [. 5.4 8.8
PAZ 1/1 298 439 .. 1 161 [] 151.8 2e-42
DUF328 1/1 503 528 .. 234 261 .] 6.8 0.9
DUF305 1/1 667 679 .. 1 13 [. 5.8 3.5
Piwi 1/1 574 878 .. 1 341 [] 433.4 2e-126
Alignments of top-scoring domains:
PAC: domain 1 of 1, from 90 to 108: score 5.4, E = 8.8
*->tvEyrlrrkDGslrWvevs<-*
+v y +r++DG++ +e+s
C18E3.7a 90 QVNYVFRKPDGTEATIEMS 108
PAZ: domain 1 of 1, from 298 to 439: score 151.8, E = 2e-42
*->lpvlelledyltertsiklsdrdrkkvkealkGlkVetthrnnkglq
+p++ell+ +++++t++k +++ +++++a+ Gl+V+ +++ +kgl+
C18E3.7a 298 APLVELLQTFRGFSTTLKANSPAAQRIEKAFVGLDVVLNYGVHKGLG 344
eaprkykiaglssnpaplskFplkdnnGneegkeitvaeYFkekYnirLk
e+++++ki +++++++++++ + k ++ +++ v++YFk+kY+i+Lk
C18E3.7a 345 EDGVVMKIRRFHTSAKETCFEVEKSTR-----EFTNVFDYFKKKYGITLK 389
ypdlPllvvggrsknlNlLPRfnkrnsqknylPpELcsivpgQrytkklf
ypdl++++++g++ + +++P E++ ++p+Q++t +++
C18E3.7a 390 YPDLFTIEAKGKQGK--------------IHFPAEVLLLCPNQTVTNDQM 425
erqtsalikkraqr<-*
++++a+++k+++
C18E3.7a 426 INNEQADMIKMSAA 439
DUF328: domain 1 of 1, from 503 to 528: score 6.8, E = 0.9
*->kgFnlaGYyFkedqStGLeeElVFkRke<-*
++Fn aG y+++ + t + ElVF e
C18E3.7a 503 TDFNRAGQYYDAKELT--KWELVFVQNE 528
DUF305: domain 1 of 1, from 667 to 679: score 5.8, E = 3.5
*->DrqFarlMIpHHq<-*
+ Fa M++HHq
C18E3.7a 667 SVGFAANMLKHHQ 679
Piwi: domain 1 of 1, from 574 to 878: score 433.4, E = 2e-126
*->livvvlpddnkedlekflydeiKkreltelgipsQcvllktlkkksk
++++++ ++++++ +++iK++e+++ ++++Q ++++t++k+ +
C18E3.7a 574 QLLFFVVKSRYNY-----HQQIKALEQKY-DVLTQEIRAETAEKVFR 614
qGgrltltNvilkanmKlGGlNyklniekeprckVCNemrviplkptlii
q ++t++N+i+k+nmKlGGlNy +++e ++ ++++li+
C18E3.7a 615 Q--PQTRLNIINKTNMKLGGLNYAIGSEAFN------------KPNRLIV 650
GfDvshppaRTkfDrenggrlnnpsvagvvasmdsphgtkfrgdvrlqpa
Gf +s++ gg+ ++p+ +g++a+m + h++kf+g+++++++
C18E3.7a 651 GFVTSQR---------VGGNPDYPISVGFAANMLK-HHQKFAGGYVYVHR 690
gqElltdlkkgiiresLrsfykntrkkkPkrIivYRDGvSEGqfsqvlny
++++++++k ++ ++ + ++++r ++P+ I++Y+ GvSEGqfs+++++
C18E3.7a 691 DRDVFGSIIK-DTLLAIFKTCTEQR-GRPDDILLYFNGVSEGQFSMINEE 738
Evnqikeackklsesyqeqe.PkltvIvvqKrHhtRfFasdksdggskak
+ + +keac+++++ ++++P++t+I+ +K+H+ R+++sdk++
C18E3.7a 739 FSARVKEACMAFQKEGTPPFrPHITIIASSKAHNERLYKSDKGRI----- 783
aqNvpPGTvVDdkitspeyydFylcsqagrqGTvkPthYtVlyDdig.ey
+N++PGTvVD++i+s++y ++y++s+++rqGT+k+t++t ++ ++ +++
C18E3.7a 784 -VNLEPGTVVDHTIVSNVYTEWYHASAVARQGTAKATKFTLIFTTKAgPQ 832
ylsadelqdLTykLCymyqrvtrpvslPaPvyYAhllAkrgrnnlk<-*
+++ ++l++LT++LCy +q+v++pv lP+P+y+A+++++rg+++l+
C18E3.7a 833 AEPLWHLEQLTNDLCYDHQIVFHPVGLPVPLYIADRYSQRGAMVLA 878