hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C18A3.5a
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Query:  C18A3.5a  CE27708   RNA binding protein status:Confirmed TR:Q95QV8 protein_id:AAK68191.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
rrm             RNA recognition motif. (a.k.a. RRM, R   232.8    4.5e-67   3
DUF276          DUF276                                    5.3        1.4   1
Ureidogly_hydro Ureidoglycolate hydrolase                 2.6        8.6   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
DUF276            1/1     104   113 ..   283   292 .]     5.3      1.4
rrm               1/3      48   116 ..     1    77 []    70.6  2.5e-19
Ureidogly_hydro   1/1     152   161 ..    11    20 ..     2.6      8.6
rrm               2/3     137   208 ..     1    77 []    99.8  6.4e-28
rrm               3/3     243   307 ..     1    77 []    63.8  2.6e-17

Alignments of top-scoring domains:
DUF276: domain 1 of 1, from 104 to 113: score 5.3, E = 1.4
                   *->ttdRLLIdie<-*
                      +++RLL d+e
    C18A3.5a   104    MNKRLLLDRE    113

rrm: domain 1 of 3, from 48 to 116: score 70.6, E = 2.5e-19
                   *->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
                      l+VgNL   vte+ + +lF ++G ++  k++ D        g++ ++
    C18A3.5a    48    LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------GSNDPY 86

                   aFVeFeseedAekAlealnGkelggrklrv<-*
                   aFVeF ++ +A  Al+++n++ l +r+++v
    C18A3.5a    87 AFVEFSDHGQASQALQTMNKRLLLDREMKV    116

Ureidogly_hydro: domain 1 of 1, from 152 to 161: score 2.6, E = 8.6
                   *->kEAFAPFGDV<-*
                      +EAF PFGDV
    C18A3.5a   152    REAFQPFGDV    161

rrm: domain 2 of 3, from 137 to 208: score 99.8, E = 6.4e-28
                   *->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
                      +fVg+L+ +v+ ++L++ F++fG++ ++k+++D     ++t kskG+
    C18A3.5a   137    VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRD-----TNTTKSKGY 178

                   aFVeFeseedAekAlealnGkelggrklrv<-*
                   +FV + + e+Ae+A+e++nG++lg r++r+
    C18A3.5a   179 GFVSYPKREEAERAIEQMNGQWLGRRTIRT    208

rrm: domain 3 of 3, from 243 to 307: score 63.8, E = 2.6e-17
                   *->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
                      ++VgN+  + te+++++ F+ fG+i++++i+k             G+
    C18A3.5a   243    VYVGNIA-SLTEDEIRQGFASFGRITEVRIFK-----------MQGY 277

                   aFVeFeseedAekAlealnGkelggrklrv<-*
                   aFV+F+++++A+kA+ ++n++ +gg+ +r+
    C18A3.5a   278 AFVKFDNKDAAAKAIVQMNNQDVGGQLVRC    307

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