Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C17C3.15
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Query: C17C3.15 CE27069 status:Partially_confirmed TR:Q9BIA6 protein_id:AAK31431.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SPK Domain of unknown function (DUF545) 114.4 6e-31 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SPK 1/1 41 152 .. 1 115 [] 114.4 6e-31
Alignments of top-scoring domains:
SPK: domain 1 of 1, from 41 to 152: score 114.4, E = 6e-31
*->aeltrfmdFLvekTKdavevkkPlpvatkvfeeFselegsglsesty
+++++f+ F++++ Kd + P+ +++++e F+++++++++ +t+
C17C3.15 41 SYIEQFVAFVAKRYKDTTT---PV-PSKELYEGFKNKIKFKKHTDTL 83
ykRFhrkLAPnmaklnnYSiEeRvRlMFaLsgkVed.dFLerieti.GtV
+k ++++L+ + ++Y++E +v+++F++s + +d++FLe +++i +V
C17C3.15 84 RKSIQPFLMGAFKD-SDYDDEKKVQMLFVTSTPLKDgMFLEKLKSIaTMV 132
eLDekkRIckYtSnDGklkL<-*
+LDe++RI+ Y S ++k+++
C17C3.15 133 KLDEFSRIEQYDSPTLKSEG 152