Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C17C3.15
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Query:  C17C3.15  CE27069    status:Partially_confirmed TR:Q9BIA6 protein_id:AAK31431.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
SPK      Domain of unknown function (DUF545)            114.4      6e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SPK        1/1      41   152 ..     1   115 []   114.4    6e-31

Alignments of top-scoring domains:
SPK: domain 1 of 1, from 41 to 152: score 114.4, E = 6e-31
                   *->aeltrfmdFLvekTKdavevkkPlpvatkvfeeFselegsglsesty
                      +++++f+ F++++ Kd +    P+  +++++e F+++++++++ +t+
    C17C3.15    41    SYIEQFVAFVAKRYKDTTT---PV-PSKELYEGFKNKIKFKKHTDTL 83

                   ykRFhrkLAPnmaklnnYSiEeRvRlMFaLsgkVed.dFLerieti.GtV
                   +k ++++L+    + ++Y++E +v+++F++s + +d++FLe +++i  +V
    C17C3.15    84 RKSIQPFLMGAFKD-SDYDDEKKVQMLFVTSTPLKDgMFLEKLKSIaTMV 132

                   eLDekkRIckYtSnDGklkL<-*
                   +LDe++RI+ Y S ++k+++
    C17C3.15   133 KLDEFSRIEQYDSPTLKSEG    152



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