hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C16C8.14
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Query:  C16C8.14  CE08225    status:Partially_confirmed TR:P91053 protein_id:AAB37856.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
ubiquitin Ubiquitin family                               68.9    8.3e-18   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
ubiquitin   1/1     155   233 .]     1    81 [.    68.9  8.3e-18

Alignments of top-scoring domains:
ubiquitin: domain 1 of 1, from 155 to 233: score 68.9, E = 8.3e-18
                   *->mkifVKtldgkg.kvtdgstitlevepsdTVlelKekIedkegippe
                      ++i V + d++g++v+ g++  l+v++sdT++++K +I +  gi+
    C16C8.14   155    FEILVIWTDSRGpVVP-GNHGKLRVCGSDTIRQIKPRINSLAGIDTI 200

                   qQrLiyaGkvLreDdttLaeYniqegsftlhlvlr<-*
                   ++r + + k L eDd+tLa+Yni+egs t+++ ++
    C16C8.14   201 SFRTFCDDKFL-EDDHTLAHYNIREGS-TICVFFH    233

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