Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C16C2.2b
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Query: C16C2.2b CE30491 locus:eat-16 regulator of G-protein signalling status:Confirmed TR:Q8T3F0 protein_id:CAD30433.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RGS Regulator of G protein signaling domain 104.1 4.4e-28 1
DEP Domain found in Dishevelled, Egl-10, and Ple 89.8 5.5e-23 1
G-gamma GGL domain 82.3 1.7e-25 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DEP 1/1 15 96 .. 1 82 [] 89.8 5.5e-23
G-gamma 1/1 204 258 .. 1 55 [] 82.3 1.7e-25
RGS 1/1 287 407 .. 1 146 [] 104.1 4.4e-28
Alignments of top-scoring domains:
DEP: domain 1 of 1, from 15 to 96: score 89.8, E = 5.5e-23
*->pesgvklkdrkwllkvipncFtGselVdWLmdnlsgvidrkeAlhla
++g +lk++k++ + +p++ tG++l+ ++++ +d++eA hla
C16C2.2b 15 VMEGAQLKTHKYFRIAVPHAITGQQLIALVLERGA-PDDEAEASHLA 60
qlLlkeGyirhvgdh.ltgkndhtFldkqtyYrfpd<-*
+lLl++Gy+++v +h++ +k+d+t+++ q++Y++p+
C16C2.2b 61 SLLLHHGYMFPVIEHgQPFKDDGTLYRLQRPYFWPS 96
G-gamma: domain 1 of 1, from 204 to 258: score 82.3, E = 1.7e-25
*->vdqlrkeveqLrkelsre.RiKvSkaaeellaYceqraenDPLltGp
++ +r+++++Lr+++++++++K+ ka+++++++++qrae+DP+l++p
C16C2.2b 204 AQGYRCLMDRLRFAIKTKpWLKALKASDTMVTWVDQRAEFDPFLHPP 250
ppskNPFie<-*
+ps NP+i+
C16C2.2b 251 QPS-NPWIS 258
RGS: domain 1 of 1, from 287 to 407: score 104.1, E = 4.4e-28
*->sfeklldkqpiGrllFreFLetefsepkenleFwlaveeyektespa
s +l k+piGr ++ FLe+efs+ en++Fw+a+++++ +++
C16C2.2b 287 SVQELV-KDPIGRQVLETFLESEFSS--ENIRFWIAIQDLKYAPN-- 328
dkrsdkarekesiEtLaaAYGIydeFispeapkfevnldselrestqdnl
+ +ka I++eF++ +ap+ +vn+d ++ ++t + +
C16C2.2b 329 EQIYQKAER------------IREEFLAQGAPA-QVNVDNRTLDQTLECI 365
leavededllksLqptkdlFeeaqreiytlMrgDSfprFLeSdyylrfL<
++a k+ + F ++++tlM++DS+prF +S +y++ L
C16C2.2b 366 SKA-------KDASQMRFAFYHSEEHVFTLMAKDSYPRFVRSQIYKAVL 407
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C16C2.2b - -