Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C16A11.4
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Query: C16A11.4 CE19354 status:Partially_confirmed TR:O76580 protein_id:AAK31410.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SPK Domain of unknown function (DUF545) 143.4 3.8e-39 1
PHD PHD-finger 15.1 0.0011 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PHD 1/1 35 81 .. 1 51 [] 15.1 0.0011
SPK 1/1 112 222 .. 1 115 [] 143.4 3.8e-39
Alignments of top-scoring domains:
PHD: domain 1 of 1, from 35 to 81: score 15.1, E = 0.0011
*->yCsvCgkvdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe
+C Cg ++ +++l+ C C++w+H+ C+++ + ++ C+
C16A11.4 35 RC-QCGTNNT--DNRLIKCVECEKWQHAICMSVMPL-DIIMTYKCEM 77
Ctpk<-*
C p+
C16A11.4 78 CEPR 81
SPK: domain 1 of 1, from 112 to 222: score 143.4, E = 3.8e-39
*->aeltrfmdFLvekTKdavevkkPlpvatkvfeeFselegsglsesty
++l++f++FL+e ++++++ Pl ++t++fe+++e++++++s++ +
C16A11.4 112 VNLEEFLEFLSEASENISR---PL-ALTTLFEDYKEHINYPQSVRIL 154
ykRFhrkLAPnmaklnnYSiEeRvRlMFaLsgkVeddFLerietiGtVeL
+k+ ++L +++++ nY + +++++Fa++ +V+ +FLer+e++++Ve+
C16A11.4 155 RKQLESNLLETISMSPNYYADRKAQMLFAMGLRVKGEFLERLERNAVVEV 204
DekkRIckYtSnDGklkL<-*
D ++RI++Y+S+++++++
C16A11.4 205 DGYHRITFYKSKNLEFRG 222