Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C15H11.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C15H11.4 CE08181 locus:dhs-22 dehydrogenase status:Confirmed TR:Q9XVS9 protein_id:CAB02732.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
adh_short short chain dehydrogenase 125.9 1.4e-34 2
3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomera 2.3 8.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
3Beta_HSD 1/1 94 116 .. 57 82 .. 2.3 8.8
adh_short 1/2 45 184 .. 1 144 [. 109.1 7.9e-30
adh_short 2/2 222 253 .. 166 200 .. 16.7 0.0011
Alignments of top-scoring domains:
3Beta_HSD: domain 1 of 1, from 94 to 116: score 2.3, E = 8.8
*->klqvitSGkikyieGDvtDkqdlaaA<-*
+++++ ++ +ie+D+tD++ +++A
C15H11.4 94 GCDAT---RLHFIECDLTDFESVRRA 116
adh_short: domain 1 of 2, from 45 to 184: score 109.1, E = 7.9e-30
*->tgKvaLvTGassGIGlaiAkrLakeGakVvvvdrreekaeqvaaelk
+g va+vTG +GIG++++++L + a V +++r+eeka+++ l
C15H11.4 45 KGLVAVVTGSNCGIGFETVRELNLRKADVYMLCRSEEKANEAKRMLV 91
ae.lG.dralfiqlDvtdeeqvkaavaqaverlGdrlDvLVNNAGilgdg
++++ r++fi++D+td e+v++a+++ +e ++D+L+NNAGi
C15H11.4 92 RQgCDaTRLHFIECDLTDFESVRRAAKETLESTD-TIDILINNAGIMF-- 138
ppfeelseedwervidvNltGvflltravlpamdhmlkrkgGrIvNisS<
+ +e +++ e++ + N G+fllt ++lp +k ++ rI+N+sS
C15H11.4 139 QSKHEQTKDGHEKTWQSNHLGPFLLTELFLP---AVKKSSYARIINVSS 184
-*
C15H11.4 - -
adh_short: domain 2 of 2, from 222 to 253: score 16.7, E = 0.0011
*->igltrsLAlElaphgtgIrVnavaPGgvdTdmtka<-*
++lt+ L+++ a+h ++Vn+ +PG v+T++ ++
C15H11.4 222 RALTKELRKDGAEH---VTVNSLHPGVVNTELARN 253