Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C15H11.4
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Query:  C15H11.4  CE08181  locus:dhs-22 dehydrogenase status:Confirmed TR:Q9XVS9 protein_id:CAB02732.1

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
adh_short short chain dehydrogenase                     125.9    1.4e-34   2
3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomera     2.3        8.8   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
3Beta_HSD   1/1      94   116 ..    57    82 ..     2.3      8.8
adh_short   1/2      45   184 ..     1   144 [.   109.1  7.9e-30
adh_short   2/2     222   253 ..   166   200 ..    16.7   0.0011

Alignments of top-scoring domains:
3Beta_HSD: domain 1 of 1, from 94 to 116: score 2.3, E = 8.8
                   *->klqvitSGkikyieGDvtDkqdlaaA<-*
                      +++++   ++ +ie+D+tD++ +++A
    C15H11.4    94    GCDAT---RLHFIECDLTDFESVRRA    116

adh_short: domain 1 of 2, from 45 to 184: score 109.1, E = 7.9e-30
                   *->tgKvaLvTGassGIGlaiAkrLakeGakVvvvdrreekaeqvaaelk
                      +g va+vTG  +GIG++++++L  + a V +++r+eeka+++   l
    C15H11.4    45    KGLVAVVTGSNCGIGFETVRELNLRKADVYMLCRSEEKANEAKRMLV 91

                   ae.lG.dralfiqlDvtdeeqvkaavaqaverlGdrlDvLVNNAGilgdg
                   ++++   r++fi++D+td e+v++a+++ +e    ++D+L+NNAGi
    C15H11.4    92 RQgCDaTRLHFIECDLTDFESVRRAAKETLESTD-TIDILINNAGIMF-- 138

                   ppfeelseedwervidvNltGvflltravlpamdhmlkrkgGrIvNisS<
                   +  +e +++  e++ + N  G+fllt ++lp     +k ++ rI+N+sS
    C15H11.4   139 QSKHEQTKDGHEKTWQSNHLGPFLLTELFLP---AVKKSSYARIINVSS  184

                   -*

    C15H11.4     -    -

adh_short: domain 2 of 2, from 222 to 253: score 16.7, E = 0.0011
                   *->igltrsLAlElaphgtgIrVnavaPGgvdTdmtka<-*
                      ++lt+ L+++ a+h   ++Vn+ +PG v+T++ ++
    C15H11.4   222    RALTKELRKDGAEH---VTVNSLHPGVVNTELARN    253



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