Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C14F5.3b
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C14F5.3b CE29174 locus:tnt-3 status:Partially_confirmed TR:Q95QW6 protein_id:AAL02435.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Troponin Troponin 65.2 4e-17 1
Ribosomal_L6e_N Ribosomal protein L6, N-terminal doma 6.8 1.2 1
TerB Tellurite resistance protein TerB 6.0 0.49 1
Varsurf_PPLC Variant-surface-glycoprotein phosphol 5.6 3 1
TSC22 TSC-22/dip/bun family 4.5 3.2 1
LexA_DNA_bind LexA DNA binding domain 3.8 5.5 1
Triabin Triabin 2.9 8.3 1
InvH InvH outer membrane lipoprotein 2.4 6.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Varsurf_PPLC 1/1 157 175 .. 34 51 .] 5.6 3
InvH 1/1 205 217 .. 135 147 .] 2.4 6.5
TerB 1/1 288 312 .. 1 26 [. 6.0 0.49
Triabin 1/1 486 501 .. 148 163 .] 2.9 8.3
TSC22 1/1 925 942 .. 19 36 .. 4.5 3.2
LexA_DNA_bind 1/1 957 967 .. 1 11 [. 3.8 5.5
Ribosomal_L6e_N 1/1 957 977 .. 1 21 [. 6.8 1.2
Troponin 1/1 887 982 .. 31 129 .. 65.2 4e-17
Alignments of top-scoring domains:
Varsurf_PPLC: domain 1 of 1, from 157 to 175: score 5.6, E = 3
*->dAasyGvsk.dSPFGlDAP<-*
+A+ yG s ++SPFG D P
C14F5.3b 157 EAGPYGPSSpFSPFGRDQP 175
InvH: domain 1 of 1, from 205 to 217: score 2.4, E = 6.5
*->qtLLaAHkRLqAL<-*
q LLaAH+R+ L
C14F5.3b 205 QRLLAAHNRVDDL 217
TerB: domain 1 of 1, from 288 to 312: score 6.0, E = 0.49
*->MsgfdkvkeaAnigakeLlakisrfk<-*
++f++++e ++i+++ ++ ++++++
C14F5.3b 288 -FSFEREEEDIQIVHNYIVTAKVKAY 312
Triabin: domain 1 of 1, from 486 to 501: score 2.9, E = 8.3
*->lqRkKsgtdPgAlesk<-*
l RkK ++P+A e+
C14F5.3b 486 LKRKKMNVIPSAAEIS 501
TSC22: domain 1 of 1, from 925 to 942: score 4.5, E = 3.2
*->LkeqIkeLveklnqLeeE<-*
Lk +IkeL ++ +Le E
C14F5.3b 925 LKAKIKELHQRICKLETE 942
LexA_DNA_bind: domain 1 of 1, from 957 to 967: score 3.8, E = 5.5
*->MkpLTeRQrev<-*
Mk L eRQr+v
C14F5.3b 957 MKELNERQRQV 967
Ribosomal_L6e_N: domain 1 of 1, from 957 to 977: score 6.8, E = 1.2
*->akkakkrkphvsRNPvLvRGI<-*
+k + r v RN+ L+ GI
C14F5.3b 957 MKELNERQRQVTRNSALKKGI 977
Troponin: domain 1 of 1, from 887 to 982: score 65.2, E = 4e-17
*->kAaeelekEqeekeeEkeraL.aeRlieplqlegaeqlakLqElcke
+A++e+ ++e++e k+ +L a R e +++++ ++++L++++ke
C14F5.3b 887 QAKQEMGMTKEQQEDAKRAFLaAIR-KEIPNASEV-PQSELKAKIKE 931
lharidEekveeEkYDlEkrvekqekelkdLnekvrQvlRaadlrgKfkk
lh+ri+ k+e+EkYDlEkr e+qe+++k+Lne++rQv R+ +l++++++
C14F5.3b 932 LHQRIC--KLETEKYDLEKRHERQEYDMKELNERQRQVTRNSALKKGIDP 979
pal<-*
+++
C14F5.3b 980 AEV 982