Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C12D5.8
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Query: C12D5.8 CE27680 status:Partially_confirmed TR:Q17928 protein_id:AAA98572.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Sre C. elegans Sre G protein-coupled chemorec 83.6 6.6e-24 2
hormone_rec Ligand-binding domain of nuclear hormone 29.2 4.7e-08 1
zf-C4 Zinc finger, C4 type (two domains) 19.4 0.00018 1
Aa_trans Transmembrane amino acid transporter prot 7.8 0.17 1
DUF409 Protein of unknown function (DUF409) 3.1 4.4 1
Str_synth Strictosidine synthase 1.8 8.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-C4 1/1 1 70 [. 1 77 [] 19.4 0.00018
DUF409 1/1 142 151 .. 573 581 .] 3.1 4.4
hormone_rec 1/1 213 270 .. 92 150 .. 29.2 4.7e-08
Sre 1/2 378 507 .. 44 209 .. 71.2 3.2e-20
Aa_trans 1/1 507 533 .. 440 466 .] 7.8 0.17
Str_synth 1/1 546 563 .. 1 18 [. 1.8 8.4
Sre 2/2 511 617 .. 272 395 .] 17.5 0.00022
Alignments of top-scoring domains:
zf-C4: domain 1 of 1, from 1 to 70: score 19.4, E = 0.00018
*->elCkVCGDkASGyHYGvlTCEGCKGFFrRsiqknlviYsCkrnkdCv
Ck+C +S H+G+ +C +C +FFrR ++ + C +
C12D5.8 1 MFCKICEVSSSELHFGIVSCRSCAAFFRRYVNSPKQLKKCNCE---- 43
IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
R C+yCR k C GM+ V+++
C12D5.8 44 ---AERAPCRYCRMKMCVKNGMMITKVQQK 70
DUF409: domain 1 of 1, from 142 to 151: score 3.1, E = 4.4
*->LFsnFLP.pt<-*
LFsnF+P++t
C12D5.8 142 LFSNFYPkWT 151
hormone_rec: domain 1 of 1, from 213 to 270: score 29.2, E = 4.7e-08
*->vlaplieLkldeeEyalLkAIvLfnPsdvpgLsesarelveklqeky
v++pl eLk+d+ E+ +L A++L++P ++++se++ e + ++++ +
C12D5.8 213 VAYPLFELKFDQMELMALLALMLLDP-GYTNISEKCSEMCHRMRKVI 258
lsaLlqycllny<-*
+++L+ y+l n+
C12D5.8 259 QRELRGYYLENN 270
Sre: domain 1 of 2, from 378 to 507: score 71.2, E = 3.2e-20
*->vllclyiflknyirlFHrNltilfiflfgqwfeliigkliiiayqlg
+ ++++++l +++FH+N+til+ ++++ ++i+++ + + +++
C12D5.8 378 FSFFFWVMLC--AKQFHFNFTILLGYIYCIHIMDNIANITMRLDMFF 422
isilidieqatfsligeytqfwtddpekmlhvpslsglellifagflqwh
+ ++ +d+ ++ ++++ ++
C12D5.8 423 GIDDLKVY---------------NDK-------------IFTASMNVSIF 444
ymgfsivifgllaiviERlfATyfikDYEkkrRiwIpgilLiiilqffsi
+m s ++++l+ ++iER+fATyf+++YEkk+R++I+ i+Li++l++f+
C12D5.8 445 TM-AS-AMCILPCMIIERCFATYFVENYEKKPRKYIS-ISLIFLLITFGT 491
ssatilylllfnklpflvl<-*
+s+ y+l +++ +++v+
C12D5.8 492 ISC---YFLRNASNTIYVM 507
Aa_trans: domain 1 of 1, from 507 to 533: score 7.8, E = 0.17
*->ildviciviglllmiygviglilslvd<-*
+l++i++++g++ +++ +++++++l+
C12D5.8 507 MLNLIIFYMGFMNVVLVLSVMLSGLKE 533
Str_synth: domain 1 of 1, from 546 to 563: score 1.8, E = 8.4
*->lslflslalfLlllilly<-*
l ++ ++++fLl++i++y
C12D5.8 546 LNTAIFVYSFLLSHIISY 563
Sre: domain 2 of 2, from 511 to 617: score 17.5, E = 0.00022
*->lvfvilffiilcglgllllsfdlsedvipeldpilnhifensiflyp
++f+++f++++ +l++ l+ ++ ++pe ++i+ ++++ +if+y+
C12D5.8 511 IIFYMGFMNVVLVLSVMLSGLKE---ITPEQQAICSVALNTAIFVYS 554
llipitimfsvpaWrkefrkilpkiglrrklinKlsrkiqlrkkkitlks
+l +i ++++ W+ ++ kig + ++ + +
C12D5.8 555 FLLSHIISYCCEKWKRHLSATWRKIGF--------------NSATVQVAP 590
ttgeddkdkrvslEtdtYFnQLnksWi<-*
++ + v + +tYF+ L+ W+
C12D5.8 591 LCDTFGSEMNVNVTVETYFDNLKTTWN 617