Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C11E4.6
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Query: C11E4.6 CE31411 ankyrin repeats status:Partially_confirmed TR:Q93203 protein_id:CAB02658.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ank Ankyrin repeat 102.4 2.3e-27 5
SAM SAM domain (Sterile alpha motif) 56.9 1.2e-14 2
PID Phosphotyrosine interaction domain (PTB/PID) 29.7 3.5e-07 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ank 1/5 61 84 .. 1 24 [. 9.1 0.86
ank 2/5 95 131 .. 1 33 [] 15.9 0.01
ank 3/5 133 165 .. 1 33 [] 34.2 5.9e-08
ank 4/5 218 246 .. 5 33 .] 18.3 0.002
ank 5/5 249 278 .. 4 33 .] 26.1 1.2e-05
SAM 1/2 890 899 .. 59 68 .] 1.8 59
SAM 2/2 904 970 .. 1 68 [] 54.9 4.5e-14
PID 1/1 1023 1141 .. 1 157 [. 29.7 3.5e-07
Alignments of top-scoring domains:
ank: domain 1 of 5, from 61 to 84: score 9.1, E = 0.86
*->dGnTPLHlAakrgnlevvklLlqr<-*
+T LH A++ +++++ klL+++
C11E4.6 61 SDFTLLHHAVLENQNQISKLLMDY 84
ank: domain 2 of 5, from 95 to 131: score 15.9, E = 0.01
*->dGnTPLHlAakrgnlevvklLlq....rGAdlnaqdd<-*
P HlAa +gnle+vk+Ll ++ ++ Ad+ +
C11E4.6 95 KNILPIHLAAWNGNLEIVKMLLLqtmeKPADILNAVN 131
ank: domain 3 of 5, from 133 to 165: score 34.2, E = 5.9e-08
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+TPLHlA++r +levv +L+++ Ad+ +++
C11E4.6 133 FNETPLHLAVQRCHLEVVFYLIKKNADPFIRNE 165
ank: domain 4 of 5, from 218 to 246: score 18.3, E = 0.002
*->PLHlAakrgnlevvklLlqrGAdlnaqdd<-*
P HlAak++++e+++ L ++G ++n ++
C11E4.6 218 PFHLAAKYNHVECMQALREHGFSINYTTE 246
ank: domain 5 of 5, from 249 to 278: score 26.1, E = 1.2e-05
*->TPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
T+LH+A+ +g++e v++Ll+ G ++++++
C11E4.6 249 TALHVASACGQAEAVRFLLEIGVNTDIKNQ 278
SAM: domain 1 of 2, from 890 to 899: score 1.8, E = 59
*->kIlssIqgLk<-*
kI+s+I++Lk
C11E4.6 890 KIMSEIEKLK 899
SAM: domain 2 of 2, from 904 to 970: score 54.9, E = 4.5e-14
*->dnwsvesVgeWLesiglgqYkeyfdsfgynsidgvalltlteeDLkd
+ ++ V+eWL igl+ Y+++f +gy ++ + + ++ L++
C11E4.6 904 SAGRFFYVSEWLNFIGLQDYISNFVGAGYKHMAKLTEIDWDTARLMQ 950
iGgvtllGHrkkIlssIqgLk<-*
+G vt++GH ++l+s ++
C11E4.6 951 LG-VTRPGHIARMLHSFKKAE 970
PID: domain 1 of 1, from 1023 to 1141: score 29.7, E = 3.5e-07
*->FeVkYLGsveVpkemrap.skstRmqvareairrlreavKkpkakki
+++ LG +e+ ++ + s++ a a+ r++e+
C11E4.6 1023 YRAHHLGVLEIGET---EcSDE-----AHAAMTRIKES--------- 1052
krskgssgerqagtkidLsistdglklldekteaekevihehplrkISFi
++++ +++L ++ g++++de k ++ + +++I+++
C11E4.6 1053 ------IIDWETIPRVTLDLTCNGITIFDETF---KTLLDGYGVYTIRVV 1093
AvggDpdVdlraFayvrstddsliaadgatsrfaCHvFecekgkqlAedi
+ D++ dl +F + +a ++ +rf CH F A +i
C11E4.6 1094 CQ--DRK-DLNFFCF---------VARDTENRFFCHTFCVLT-SGIAAEI 1130
aeavgqAFeva<-*
++++g Fe++
C11E4.6 1131 ITTIGMMFELR 1141