Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C08H9.3
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Query: C08H9.3 CE02989 glucosyltransferase status:Partially_confirmed SW:P52887 protein_id:CAA91145.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Alg6_Alg8 ALG6, ALG8 glycosyltransferase family 251.4 1.3e-71 2
Endonuc_V Endonuclease V 75.0 1.6e-19 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Alg6_Alg8 1/2 12 320 .. 1 331 [. 258.6 8.6e-74
Alg6_Alg8 2/2 323 422 .. 414 550 .] -2.2 1.5e+02
Endonuc_V 1/2 484 571 .. 49 134 .. 57.8 9e-15
Endonuc_V 2/2 630 673 .. 183 227 .] 17.2 0.0014
Alignments of top-scoring domains:
Alg6_Alg8: domain 1 of 2, from 12 to 320: score 258.6, E = 8.6e-74
*->lvalflkllISLiPySgsgsPPMYgDFEaqRhWleIThsLPisqWYf
+++ +k+l LiP++ s +DFE++R+W++ T P+ +WY+
C08H9.3 12 AILISFKCL--LIPAYVS------TDFEVHRNWMAVTWQRPLCEWYT 50
nsTsndLQYWgLDYPPftAYfeylLsiiakffifDprwldLvtsrGYeSk
++Ts+ W+LDYPPf+AYfe+ L+ +a+ff+ +++l+ ++ +S
C08H9.3 51 EATSE----WTLDYPPFFAYFELGLASVAHFFG-FDECLV-ISKTPRFSR 94
atGLklFmRltVIisDlLly.lpAvrlycks..lkrgrklspkkkf...i
+ + F+R++VI+ D+L+ + A++++ s++l ++r++ +++++++
C08H9.3 95 RI--LIFQRFSVIFCDILYIaVCALYSF-RSprL-VSRIPKKLQQNgreA 140
lailiLlsPGLLlIDHgHFQYNgflLGllLlsIaaLlkeryllaAflFvl
++l++ +L++ D +HFQYN+ l +++L s ++ eryl+aA+ ++
C08H9.3 141 CFVLLASLQALIICDSIHFQYNSMLTAIFLMSLFFIDTERYLMAALSYSI 190
ALnFKQmeLYhAPpfFvYLLrrYClkkkkfrskirlklksFarlvkLalv
+LnFK+++ Y+A+ + +Y L f ++ l ++La +
C08H9.3 191 LLNFKHIYVYYALGYVFYYLVN------YFQFSGNVLLANTPKAISLAIA 234
VvatFaiifgPFlyldylkqipQVLsRLFPFaRGLfedkvAPNFWclynf
+ +F ++ +PF+ + + + ++ + RLFP++RGL+++++APNFW+lynf
C08H9.3 235 LLIPFCASIFPFIHASGVQGLQNIATRLFPVSRGLTHAYWAPNFWALYNF 284
ldKilevlllKLgYvlqqdtaiaspsfTsGLVqdvs.FaVL<-*
+d l ++l +l ++ ++ +p +TsGLVq +++L
C08H9.3 285 ADLCLYRVLS----LLKIG-KFDAPTYTSGLVQNPKyHSIL 320
Alg6_Alg8: domain 2 of 2, from 323 to 422: score -2.2, E = 1.5e+02
*->llnvgyfSLfPLLfkdelllikvvltlaffiiylkaFisktsFskpr
l+ ++ fSLfPLLf++ ++l k+ ++++f i l
C08H9.3 323 LTCIASFSLFPLLFTPFETLLKYAICVSYFFIQL------------- 356
klSkeltqlkSiSkikskyrkrvfl..Lfnriellyilglipiviylhfl
+++krv+l +L++ i + + + +++ +
C08H9.3 357 -----------------VFLKRVTLmpLSDLIPTRHVASWL-LMG----M 384
dlfvWRYpppqKyPdLwlLLnsvySalgffyfffaLLwlyfl<-*
+ + + +++P+ +l+++s + a+ + +aL w+ f
C08H9.3 385 VEWL----WTSRLPFAPLMAISILTAIELTGLIGALIWSTFG 422
Endonuc_V: domain 1 of 2, from 484 to 571: score 57.8, E = 9e-15
*->dlptlevvekavvCrgevsfPYIPGFLAFRElplllkalekLsde..
++p+l+ v + ++ PYIP +LA RE++++ ++l+ +e++
C08H9.3 484 TYPDLKHVATISD-TRMLELPYIPQYLAVREAEVMADFLKSVITErp 529
...pdidvllVDGnGiaHPRrfGLAsHiGVlLdlPTIGVAKklL<-*
+ +pd v+l+DG G H R++G A+H+G l ++++IGVAK+l+
C08H9.3 530 elrPD--VILCDGFGEFHSRGCGMACHVGALSGIASIGVAKNLT 571
Endonuc_V: domain 2 of 2, from 630 to 673: score 17.2, E = 0.0014
*->ifvSpGhrislesalkLvkklskghyrlPEPtRlADiltkalkre<-
+fvS G i+le + +++ +l+ + + EP+R AD+++++l re
C08H9.3 630 VFVSAGYGIDLELSTEICSQLLLNNTTI-EPIRAADLESRRLVRE 673
*
C08H9.3 - -