Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C08E3.4
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Query: C08E3.4 CE08007 status:Partially_confirmed TR:O17194 protein_id:AAB70965.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FTH FTH domain 138.5 1.2e-37 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FTH 1/1 40 181 .. 1 153 [] 138.5 1.2e-37
Alignments of top-scoring domains:
FTH: domain 1 of 1, from 40 to 181: score 138.5, E = 1.2e-37
*->rekivesleevLkslkkclhVkkislsgfsfsevasILpyFdagtLe
r+k++ + + L+s +k+l k+++ ++ + e+a++Lp+F+a+ L+
C08E3.4 40 RTKFIAGVGKSLRS-AKNLTSKTVQTQFVAYPELAQLLPIFPAERLK 85
eIelkssssseiddferiveLeQWKnAKslkiessvvssfpIEhLfHFee
++ l + + +++++++L+QWK+A++++++ ++++ pIE +fHFe+
C08E3.4 86 KLIL---NGLDGQEYKQLIDLDQWKQARIFHGYAENLII-PIEKFFHFER 131
FditldsfsveDAiKIRDiLlksstFesctiFesdvfefsnsnpieiarv
Fd++l +f+ DA+ +R ++++s++F + i + +n + r+
C08E3.4 132 FDVHLARFTEADALRLRAMIDRSAHFGFAGI------CCNYMNNSALKRI 175
FdPdye<-*
F+ +e
C08E3.4 176 FNVEHE 181