Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C08B11.4
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Query: C08B11.4 CE27798 locus:nrf-6 status:Confirmed SW:Q09225 protein_id:CAA86669.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Acyl_transf_3 Acyltransferase family 44.3 4.1e-11 1
Mab-21 Mab-21 protein 6.9 0.45 1
DUF350 Domain of Unknown Function (DUF350) 5.0 8.7 1
BacA Bacitracin resistance protein BacA 4.0 3.9 1
DUF677 Protein of unknown function (DUF677) 3.0 7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF677 1/1 102 109 .. 1 8 [. 3.0 7
BacA 1/1 301 320 .. 256 275 .] 4.0 3.9
DUF350 1/1 304 329 .. 1 26 [. 5.0 8.7
Mab-21 1/1 595 612 .. 1 18 [. 6.9 0.45
Acyl_transf_3 1/1 373 794 .. 1 464 [] 44.3 4.1e-11
Alignments of top-scoring domains:
DUF677: domain 1 of 1, from 102 to 109: score 3.0, E = 7
*->LkSFDssL<-*
LkSFD+s+
C08B11.4 102 LKSFDISM 109
BacA: domain 1 of 1, from 301 to 320: score 4.0, E = 3.9
*->ikrhklipFaiYRiilGivl<-*
++ ++l+ Fa Y++i+ +vl
C08B11.4 301 MSENGLAMFALYLLIATVVL 320
DUF350: domain 1 of 1, from 304 to 329: score 5.0, E = 8.7
*->esLvatllYgvvgvvvlllglyivel<-*
++L ++lY++++ vvl+ + ++++l
C08B11.4 304 NGLAMFALYLLIATVVLVTFGTLYDL 329
Mab-21: domain 1 of 1, from 595 to 612: score 6.9, E = 0.45
*->MlaaqqklVYqlNkYfne<-*
l a+ ++VYqlN Y+n+
C08B11.4 595 ILTAKLQIVYQLNDYWND 612
Acyl_transf_3: domain 1 of 1, from 373 to 794: score 44.3, E = 4.1e-11
*->srrldldglRGlAIllVvlfHfaptlffgttd...vfsllsylk...
+ +l g R+l++++++l+H +++++ t+++ v++l++++k+ +
C08B11.4 373 REINSLHGVRFLSMCWIILGHTYYYIGTSLTTdnlVPTLINFPKqfh 419
....pngylgVDlFFViSGfLmtmlllrrarqaeklslf..........s
++ + +l+VD FF++SG L++ ++ ++ ++k +++++++ + + +
C08B11.4 420 tqiiVQAPLAVDSFFFLSGMLAAFSFFKK---TMKADPNhppklsafnwQ 466
sfteFykrRfkRilPlYllfvillslialyllfpdtaletnw....rsal
+ +y++R +Ri P Y++++++ ++++ y + +++ + ++++ + ++
C08B11.4 467 TWPMYYYKRYIRITPTYIIVMLFDVTLFTYISNGPFWRPIERqgcsIAWW 516
aaLllvsnrlkiheedYFdmflalssaidifthlWSLsvEmqFYllvpli
+L++ +n+l l+ + +++W+L+ mqF + + +
C08B11.4 517 TNLIYLNNFL-------------LQDQECCMGWTWYLANDMQFHIFLMPL 553
flllrlklpneklkrallrrallvlaivallglislvifalipd......
+ + ++ ++ ++v + ++ +++ +++ +li ++ + +
C08B11.4 554 LVI---VFL---------KWGMKVGLGLSTGLIALSSLIRLIITqiygyp 591
........syafnsvald.wfiyf.tfarlwqFlaGalvylwskskiqei
+ + + + ++ ++++ +++y ++ +r+ F++G++
C08B11.4 592 papiltakLQIVYQLNDYwNDVYVrPYIRCTPFIVGIV------------ 629
ssskskeev.ec.kll.d.e.sed.ssilawlafaakifrrrlpsrlrky
v + ++++++e+++ + + + +++++++
C08B11.4 630 --------VaYLlNAWtTrEqKDLkIK--------------LERRTVIIC 657
llllallavaalpfalpnsltslfvrpyglglvsvk.vlllvtlvtalli
+ +l+++ + +++++ +t +++ ++ ++ ++ ++++ + +l+
C08B11.4 658 WCTSTVLGLYSVFGLYWFAKTGDISK----PWEILYtI-FGTPAYALALG 702
lvseglnntrl.qgll.grsqlLsnrlLvylGdiSYslYLvHWPviaywk
+v + ++g + ++Ls+rl+v l +i+++ YL+H ++ +
C08B11.4 703 WVVFA-----CtTGNGgPVDTILSWRLFVPLSKITFCAYLLHPIMLQIYN 747
lttggdmlikaillgfvflsvlqqygafwlltsnlgllllallvsillai
l+ + ++f + ++ +++ a+++s +a
C08B11.4 748 LSRPQP-------------------FHFTTFIQMIRYTVEAVFASYTIAF 778
llhefvEkpylkllsr<-*
++ + +Ekp+ k + +
C08B11.4 779 FFSLAFEKPLNKIDEM 794