Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C08B11.3
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Query: C08B11.3 CE01473 Zinc finger, C2H2 type status:Partially_confirmed SW:Q09441 protein_id:CAA86663.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ARID ARID/BRIGHT DNA binding domain 174.7 1.5e-48 1
zf-C2H2 Zinc finger, C2H2 type 15.9 0.066 1
RNA_pol_N RNA polymerases N / 8 kDa subunit 5.7 4.5 1
RFX_DNA_binding RFX DNA-binding domain 5.4 1.3 1
Chorion_2 Chorion family 2 3.5 8 1
Enterotoxin_HS Heat-stable enterotoxin 1.7 5.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ARID 1/1 21 131 .. 1 116 [] 174.7 1.5e-48
RNA_pol_N 1/1 258 272 .. 69 87 .] 5.7 4.5
Chorion_2 1/1 323 331 .. 1 9 [. 3.5 8
RFX_DNA_binding 1/1 626 650 .. 21 45 .. 5.4 1.3
Enterotoxin_HS 1/1 927 954 .. 17 48 .. 1.7 5.3
zf-C2H2 1/1 945 970 .. 1 24 [] 15.9 0.066
Alignments of top-scoring domains:
ARID: domain 1 of 1, from 21 to 131: score 174.7, E = 1.5e-48
*->eaqtrerkeFldrLikFmekrGtpltkiPvvgkkeLDLYrLyrlVke
++++r+++eF+++L++F+++r+++++k+P+v+++e++LYrLy++V++
C08B11.3 21 PEKQRKMAEFYNSLRMFYKRRWNATLKLPHVQGVEVNLYRLYDTVMA 67
kGGlqqVtkkkkWreiareLnipdsisRGvPSsaaslLrshYmryLypyE
GG+q+V++++kW++ia++++++d+i+ +++++++++YmryL+++E
C08B11.3 68 LGGWQKVAASDKWSDIAEMFGCKDDIL-----CGDHAIKIIYMRYLSKFE 112
cyeeeenlpdeteaamdme<-*
++e++++++d+++++m+++
C08B11.3 113 QVETIGDVDDYVDNEMSRS 131
RNA_pol_N: domain 1 of 1, from 258 to 272: score 5.7, E = 4.5
*->MLishvdGeDGRelirkii<-*
ML++ +d Re+ ++i
C08B11.3 258 MLMTFLD----REIEAEYI 272
Chorion_2: domain 1 of 1, from 323 to 331: score 3.5, E = 8
*->MKfLiiFVt<-*
MKfLi +++
C08B11.3 323 MKFLIMCAS 331
RFX_DNA_binding: domain 1 of 1, from 626 to 650: score 5.4, E = 1.3
*->WLkenyEeqedvclPRsklYahYlk<-*
W+++n+ + PR++lYa+Y++
C08B11.3 626 WIRQNCVFEPAMSTPRGELYAAYVD 650
Enterotoxin_HS: domain 1 of 1, from 927 to 954: score 1.7, E = 5.3
*->taEvnkkkCdtqkenpeikveenndwdyCCEl<-*
+ E+ k+kC +++ np + + dw +CC +
C08B11.3 927 AQESEKRKCVPPSSNPT---DYMCDW-DCCSI 954
zf-C2H2: domain 1 of 1, from 945 to 970: score 15.9, E = 0.066
*->ykCpf.dCgksFsrksnLkrHlrt.H<-*
y+C+++ C + ++s+ +Hl +H
C08B11.3 945 YMCDWdCCSIYYASPSHVLKHLSEeH 970