Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C07A9.8
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Query: C07A9.8 CE00497 Putative membrane protein status:Partially_confirmed SW:P34319 protein_id:CAA82342.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF289 Putative membrane protein 820.7 5.1e-243 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF289 1/1 44 428 .. 1 404 [] 820.7 5.1e-243
Alignments of top-scoring domains:
DUF289: domain 1 of 1, from 44 to 428: score 820.7, E = 5.1e-243
*->MTisYnldVstssiwtFfkLllRWKGSiWKavwkELivWlflYyiIF
+++Yn+d++ts+ +++++++++W+GS+W+av+kELivW+++Y+++
C07A9.8 44 LSYNYNYDLATSKSLMIVRMIFKWRGSLWQAVYKELIVWICAYSLV- 89
saIYRfaLsksqwdgyqe......iFeklvryfdsrldytIPLtFMLGFF
s+IYRfaL++sq +e++++ iFe++ +y+d+r+ y +PL+F+LGFF
C07A9.8 90 SVIYRFALTRSQ----KEqnkeiiIFERFGEYCDARMGY-LPLNFVLGFF 134
VttVvrRWwkiFdniGwIDniAlavaayirGkdeeaRiiRRnIiRYlVLs
+++++rRW k++ ++G+IDniAl+v+ay+rG+d++aR+iRRnIiRY+V+s
C07A9.8 135 CNIIIRRWLKLYTSLGNIDNIALFVSAYVRGTDDRARQIRRNIIRYCVIS 184
QvLvFRDISmkVRkRFPTldtlVaAGlMteeEldklsesikskyyvgdkY
Q+LvFRDI+++VR+RFPTl+++++AG+M ++El+k+ +siks+y+ kY
C07A9.8 185 QCLVFRDIHVGVRRRFPTLEAVAQAGIMLPHELEKF-NSIKSRYQ---KY 230
WvPInWafsLlQyearkeGlIdsdylynvlwdeIkeFRtglalLsnyDWV
Wv++nWa++Ll ++a++e+ Id+d++ n++++eI +FR++l+++s+yDWV
C07A9.8 231 WVSFNWALELL-NVAKTEKSIDGDNARNAIAQEISKFRSALTTVSMYDWV 279
PIPLvYPQVVfLAVRlYFfvCLfgRQfldsddndnktenyIDlyfPVPFi
PIPL+YPQ+V++AV++YFf+C+f+RQf++s d++nkte +Dly+P +
C07A9.8 280 PIPLMYPQLVNMAVHTYFFLCIFTRQFFISADAHNKTE--VDLYIP---F 324
mTilQFIFyvGWmKVAEvLLNPlGEDDDDFEcNyiIDRNLavGlaIVDtl
mTi++FIFy+GW+KVA+ LLNP+GED DDF+cN +IDRNLa+Gl+ VD++
C07A9.8 325 MTIIEFIFYMGWLKVAMELLNPFGEDADDFDCNLLIDRNLAIGLTSVDDA 374
WvkEnqydrhPelekDvFwdedaePlYstsesFakipnnplvGSaanvkl
yd++Pe++ DvF++ ++Pl s + ++++ ++++GSaa++++
C07A9.8 375 ------YDQLPEVKPDVFTGGSVKPLDS---D-DTRSLKYHFGSAAQMEE 414
send.veEvkmvph<-*
+++++eE+km+ +
C07A9.8 415 ISYLkKEENKMIAA 428