hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C06A1.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  C06A1.3  CE02116   serine\/threonine protein phosphatase status:Partially_confirmed SW:P48458 protein_id:CAA90052.1

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
Metallophos Calcineurin-like phosphoesterase            142.1      1e-38   1
Fic         Fic protein family                            6.6        2.5   1
COX17       Cytochrome C oxidase copper chaperone (CO     6.6       0.63   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Fic           1/1      91   133 ..     1    41 [.     6.6      2.5
Metallophos   1/1      86   281 ..     1   124 []   142.1    1e-38
COX17         1/1     328   346 ..     1    19 [.     6.6     0.63

Alignments of top-scoring domains:
Fic: domain 1 of 1, from 91 to 133: score 6.6, E = 2.5
                   *->llelHri..lfeddydwaGqfRttqvakvgnfvfpppeaveal<-*
                      + ++H++ ++++ + d +G++ ++  ++ g++v  +p+++e+l
     C06A1.3    91    IGDIHAQyqDMNRLFDLIGRVPEEKLMFLGDYVDRGPQGIEVL    133

Metallophos: domain 1 of 1, from 86 to 281: score 142.1, E = 1e-38
                   *->mrilvigDlHggfedlllllela.e.kpdlvlflGDlvdrgppslev
                      ++i vigD+H ++ d ++l++l+++ +   + flGD+vdrgp+ +ev
     C06A1.3    86    APIKVIGDIHAQYQDMNRLFDLIgRvPEEKLMFLGDYVDRGPQGIEV 132

                   llllfalklkapgpvylvrGNHDfdsgnsvy..............welfl
                   l llf+lk+++ +++yl+rGNH+ +s+n+ y+++    ++++ + w+ f+
     C06A1.3   133 LILLFCLKIRYRDRIYLLRGNHETPSVNKIYgfyvecqykygiglWWDFQ 182

                   eef.lllla.lvdgkillvHgglspd........................
                    +f++++  +l+ +++l++Hgglsp+  + +  ++ +++ ++ +++   +
     C06A1.3   183 SCFnRMPMSgLISKRVLCMHGGLSPElinldtirniprpcepldrgllid 232

                   ............................leellk.ngvdlvirGHtH.p<
                     ++++ ++++++ ++ ++ +   +++ +e+++k++++dl+ir+H+  +
     C06A1.3   233 llwsdptnkgegwfhsirgisymfgkgvVEQACKsLEIDLIIRAHQVvQ  281

                   -*

     C06A1.3     -    -

COX17: domain 1 of 1, from 328 to 346: score 6.6, E = 0.63
                   *->Patatpskapaaasiapkp<-*
                      P++++++ka+aa++ia +p
     C06A1.3   328    PPLPEGTKAKAAPAIAIDP    346

[DB home][top]