Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C05D2.3
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Query:  C05D2.3  CE29022   aromatic-L-amino-acid decarboxylase status:Partially_confirmed TR:O45138 protein_id:AAC02720.2

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
pyridoxal_deC Pyridoxal-dependent decarboxylase conse   302.5    2.6e-87   2
DUF585        Protein of unknown function (DUF585)        8.2       0.23   1
PsaL          Photosystem I reaction centre subunit X     3.6        6.9   1
Lipoprotein_9 NLPA lipoprotein                            3.3        6.8   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
pyridoxal_deC   1/2      35   160 ..     1   126 [.   128.7  1.2e-36
DUF585          1/1     157   183 ..     1    27 [.     8.2     0.23
PsaL            1/1     202   214 ..     1    13 [.     3.6      6.9
Lipoprotein_9   1/1     279   305 ..     1    29 [.     3.3      6.8
pyridoxal_deC   2/2     219   445 ..   150   399 .]   173.7  9.1e-50

Alignments of top-scoring domains:
pyridoxal_deC: domain 1 of 2, from 35 to 160: score 128.7, E = 1.2e-36
                   *->PgylrpllpeaaPikpeslldileDieknimpGvthWhsPnfhayfp
                      Pgy  +  p   P  pes++++++D ek+i  G +hW +P+f+ayf+
     C05D2.3    35    PGYIEKSVPSNPPTTPESWEKVFGDLEKVIFNGSSHWNHPHFFAYFS 81

                   agnSypslLGdmLsdaINcngFtwessPAcTELEvvvmdwlgkmlglPke
                   ag  y+s+L+d  s++++++gFtw++ P  TELE +++dwl ++  lP e
     C05D2.3    82 AGIGYHSILADIISSGLGSVGFTWIACPPITELEKITLDWLVDLTSLPVE 131

                   flgssgsqGGGvlqgggSESnLlallAAR<-*
                   f  s+++ G G++q+++S S+L+a++ AR
     C05D2.3   132 FKNSHPGHGCGIIQSSASDSTLIAIMTAR    160

DUF585: domain 1 of 1, from 157 to 183: score 8.2, E = 0.23
                   *->MSkfvadDetYvRqVPS.FQWllDqtle<-*
                      M    a  e +++q PS+FQWl+  t+e
     C05D2.3   157    MTARAAKVE-FIKQNPStFQWLINSTSE    183

PsaL: domain 1 of 1, from 202 to 214: score 3.6, E = 6.9
                   *->qqvvkPyngDPfV<-*
                      +++++Py+ DP V
     C05D2.3   202    TDIITPYYHDPRV    214

Lipoprotein_9: domain 1 of 1, from 279 to 305: score 3.3, E = 6.8
                   *->tikvGatpgPhaeilewvvkpllKkkGGl<-*
                       ++vG+t++  a+ +e ++ ++ +k+G l
     C05D2.3   279    ALTVGTTATCAADDVE-KIGQICQKEG-L    305

pyridoxal_deC: domain 2 of 2, from 219 to 445: score 173.7, E = 9.1e-50
                   *->VlYtSdqaHsSvmeKaakiagVktdnlrlipsdedngkmrgddLeka
                      V+Y  dqaHsSv eK a +agV+   lr +    +n +m+ + L+ a
     C05D2.3   219    VMYFTDQAHSSV-EKGAMLAGVRFRKLRSVRGYMENYEMDSKILIDA 264

                   IeedkerGLiPffVcATlGTTvsgaFDnlqelgdicaklgietGydlWlH
                   Ie+d  rG iPf V+ T+GTT ++a D+++ +g ic+k      ++l+lH
     C05D2.3   265 IEQDRSRGFIPFMVALTVGTTATCAADDVEKIGQICQK------EGLYLH 308

                   VDAAyaGsAf.IcPefRhplewlfGiEraDSisfnPHKwmlvlldCsalw
                          +Af  c ef     + +G+ ++DS ++  HK ++ ++dC+ lw
     C05D2.3   309 -------GAFaFCDEFKY---LVNGLKYVDSYNTDLHKAGMINFDCCPLW 348

                   vKdksaLqdalsvnpeYLkhndkqsdvavDfktwqIplSRgnrfriLKlW
                   +K+ +   +  +v+p YL h+ + s    D+++   pl+R  rfr+LK+W
     C05D2.3   349 FKNGTYASRYYNVDPVYLAHEYQSS--NMDYRHLEVPLGR--RFRSLKVW 394

                   fvlRsyGveglqnhIrehvelAkyfedlvrkdgrdFeivadpernlglVc
                   f  R  Gve  ++++r+ v lA  f++++ +    Fe+ +  +++lg+
     C05D2.3   395 FTMRNMGVEKIREYQRKTVSLALLFTKIIVEGDK-FELFT--PPHLGMAT 441

                   FrlK<-*
                   FrlK
     C05D2.3   442 FRLK    445



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