Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C05C8.6
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Query: C05C8.6 CE07924 status:Partially_confirmed TR:O16313 protein_id:AAB65373.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
BTB BTB/POZ domain 107.2 3.1e-28 2
Arg_repressor_C Arginine repressor, C-terminal domain 5.2 6.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Arg_repressor_C 1/1 53 70 .. 1 18 [. 5.2 6.4
BTB 1/2 54 165 .. 1 137 [] 107.7 2.2e-28
BTB 2/2 168 197 .. 107 137 .] 3.9 9.8
Alignments of top-scoring domains:
Arg_repressor_C: domain 1 of 1, from 53 to 70: score 5.2, E = 6.4
*->lLkslvvsidraenliVl<-*
++++ + s+d+++ ++Vl
C05C8.6 53 SFDEIFTSTDHSDVTLVL 70
BTB: domain 1 of 2, from 54 to 165: score 107.7, E = 2.2e-28
*->lnelrengelcDVtlvvgdgegknevtSgkefkAHKavLaAcSpYFk
++e + + +++DVtlv +d g ef AH+++La +S++F+
C05C8.6 54 FDEIFTSTDHSDVTLVLDD---------GTEFAAHRLILAVRSSFFR 91
alFtgnfkestteeessviseielddvspedfealLefiYtgelsitqeq
a++ + ++es++ ++l++ ++ +f+a+L+++Yt+++++
C05C8.6 92 AMLYTG------FQESHQQ-LVTLQETNSVAFRAVLRYMYTSKIDF---- 130
ksPssc.kseenveelLelAadklqipslvdaCeefliknl<-*
++++ + + e+L+lA +++++ l++a e+++++l
C05C8.6 131 -----AgVELDILLEYLSLA-HRYDLIQLMTAISEYFKEIL 165
BTB: domain 2 of 2, from 168 to 197: score 3.9, E = 9.8
*->enveelLelAadklqipslvdaCeefliknl<-*
en+ +++ +A ++q +l+d C ++ +k+
C05C8.6 168 ENLCSIFNAA-YFFQFTDLIDYCMQYSDKHA 197