Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C02C2.1
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Query: C02C2.1 CE06754 Tyrosinase status:Partially_confirmed SW:P34269 protein_id:AAA27909.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ShTK ShTK domain 83.5 1.4e-23 2
tyrosinase Common central domain of tyrosinase 62.6 1.4e-16 2
Arthro_defensin Arthropod defensin 5.7 0.38 1
DUF333 Domain of unknown function (DUF333) 4.5 6.5 1
DUF281 Domain of unknown function (DUF281) 4.0 5.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
tyrosinase 1/2 157 191 .. 102 138 .. 12.8 0.01
DUF333 1/1 323 330 .. 72 79 .] 4.5 6.5
tyrosinase 2/2 289 387 .. 269 379 .] 52.3 9.9e-14
Arthro_defensin 1/1 407 428 .. 14 36 .] 5.7 0.38
ShTK 1/2 479 515 .. 1 44 [] 39.8 1.9e-10
DUF281 1/1 518 531 .. 1 14 [. 4.0 5.3
ShTK 2/2 522 558 .. 1 44 [] 51.7 5.3e-14
Alignments of top-scoring domains:
tyrosinase: domain 1 of 2, from 157 to 191: score 12.8, E = 0.01
*->vHesplFlpWHRwYLyfyEriLgklindptFAlPYWn<-*
+H++p Fl WHR Y + E i ++i dp + PYW+
C02C2.1 157 AHSGPGFLVWHREYMKRME-IALRMI-DPGISMPYWD 191
DUF333: domain 1 of 1, from 323 to 330: score 4.5, E = 6.5
*->WElFRsnh<-*
WE +R+nh
C02C2.1 323 WEMWRQNH 330
tyrosinase: domain 2 of 2, from 289 to 387: score 52.3, E = 9.9e-14
*->HNpvHiwtGgntkynlPngisngedMgsfysaafDPIFylHHsNVDR
H+++H+w+Gg dM + ++a+DP+F+lHH++VD
C02C2.1 289 HASIHLWMGG--------------DMKPPSTSANDPVFFLHHTFVDF 321
lWsiWkalggksF....rtdfpeadwlishfrfydenpfppkrvkvrDcf
+W+ W ++++F ++++ +++ a +++s+ + y + + ++k ++ + ++
C02C2.1 322 IWEMWRQNHQNRFarenQYPPDIAACANSQHFSYAQMRPWDKINRDGLSN 371
dtsrpklGYdYedqptpw<-*
++ + Y Y++ pt
C02C2.1 372 AYT--DNLYHYAPRPTCN 387
Arthro_defensin: domain 1 of 1, from 407 to 428: score 5.7, E = 0.38
*->HClakGGrrGGyCnglkavCvCR<-*
HC+ak + GG C g+ + C+
C02C2.1 407 HCVAKV-KPGGLCRGFEGLDSCY 428
ShTK: domain 1 of 2, from 479 to 515: score 39.8, E = 1.9e-10
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C +++++C +w +++e C++++ +m+++C+k+CG+C+
C02C2.1 479 NCY---NEDPCCNQWSRQNE-CRTNT---VYMNRYCRKSCGLCQ 515
DUF281: domain 1 of 1, from 518 to 531: score 4.0, E = 5.3
*->mtndGCstlavkCe<-*
++n GC + ++C+
C02C2.1 518 DNNRGCHDRHISCA 531
ShTK: domain 2 of 2, from 522 to 558: score 51.7, E = 5.3e-14
*->tCvDyvDpasdCaawaslGefCnnppYyqdfmkenCpkTCGfCs<-*
+C D++++Ca+w+ +++ C+++ ++m+enC+ TCG C+
C02C2.1 522 GCH---DRHISCAYWRGQNF-CTRRR---QWMAENCQATCGWCN 558