Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C02A12.1
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Query: C02A12.1 CE07825 glutathione S-transferase status:Confirmed TR:O16198 protein_id:AAB65264.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GST_N Glutathione S-transferase, N-terminal domain 75.5 1.6e-20 1
GST_C Glutathione S-transferase, C-terminal domain 42.1 1.3e-10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GST_N 1/1 3 77 .. 1 88 [] 75.5 1.6e-20
GST_C 1/1 83 199 .. 1 121 [] 42.1 1.3e-10
Alignments of top-scoring domains:
GST_N: domain 1 of 1, from 3 to 77: score 75.5, E = 1.6e-20
*->sstlklfngrgspraervrillalekGveyeivrvdleagehksnkr
++ l++fn rg +ae+ r++ +Gve+e+vr+++
C02A12.1 3 KYRLHYFNARG--YAEASRAMFH-MAGVEFEDVRYEI---------- 36
peflklnPlm...LpfgqvPaLvdgdGdgkkltESrAIarYlar<-*
+++ k ++++ pfgq+P+L+++ g+k+ +S+AIar++a+
C02A12.1 37 DDWIKEENTLkneMPFGQMPVLEVD---GEKIPQSVAIARFVAN 77
GST_C: domain 1 of 1, from 83 to 199: score 42.1, E = 1.3e-10
*->Gkdpderaaaerarwdmiedsrfadlrldlawlpygkpergaekdee
G++p+e +a+ a d + d f + ++a+ +g p + + +de
C02A12.1 83 GQTPVE-KAWADAFTDLYKD--FLIDMKPWAMIAFGYPGAAGDRDEL 126
eveealekllkvlealeeeLkghgkkylvGdkltlADialapaldwlerl
+ +++ k+++ l ++L+++++ +l + +++ D+++++ + l +l
C02A12.1 127 KKTSLDPAKEKYFKLLSKRLEKSKSGFLLDSGISFPDLFFFETTTSLIEL 176
dpdplfreeyPnLkawrkrvaarp<-*
+ +l +++P ++a++kr+a++p
C02A12.1 177 EKGFL-GTDFPVVNAYFKRIAEHP 199