Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C01G8.9
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Query: C01G8.9 CE30415 status:Partially_confirmed TR:P91019 protein_id:AAB37646.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ARID ARID/BRIGHT DNA binding domain 192.6 6.1e-54 1
LysR_substrate LysR substrate binding domain 4.2 6.5 1
CPSase_L_D3 Carbamoyl-phosphate synthetase large c 4.0 0.64 1
Ribosomal_L31e Ribosomal protein L31e 3.0 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_L31e 1/1 2 19 .. 79 97 .] 3.0 9.8
ARID 1/1 296 407 .. 1 116 [] 192.6 6.1e-54
CPSase_L_D3 1/1 944 956 .. 1 13 [. 4.0 0.64
LysR_substrate 1/1 1203 1227 .. 189 213 .] 4.2 6.5
Alignments of top-scoring domains:
Ribosomal_L31e: domain 1 of 1, from 2 to 19: score 3.0, E = 9.8
*->rNedEDAkeelyvlvtvAe<-*
rN +EDA + + ++vA
C01G8.9 2 RN-GEDADKYAASVAEVAH 19
ARID: domain 1 of 1, from 296 to 407: score 192.6, E = 6.1e-54
*->eaqtrerkeFldrLikFmekrGtpltkiPvvgkkeLDLYrLyrlVke
+++++er++F++rLi+F+e++G+plt++P+v+k+++DL+rLy++V++
C01G8.9 296 MKVMAERRGFFERLIEFCEHNGEPLTMVPQVSKQSIDLHRLYIGVRA 342
kGGlqqVtkkkkWreiareLnipdsisRGvPSsaaslLrshYmryLypyE
kGG+qqVtk+k+W+++++e+n++ ++s S+a+++Lr+hY+r+L++ E
C01G8.9 343 KGGFQQVTKDKYWKNLCTEANPDLAES----SAAGYQLRKHYQRHLLMLE 388
cyeeeenlpdeteaamdme<-*
c+e+++n++de+++a++m+
C01G8.9 389 CRETGRNPEDEVAFADKMK 407
CPSase_L_D3: domain 1 of 1, from 944 to 956: score 4.0, E = 0.64
*->lreeLrtPtddRl<-*
+ +eL+++t++Rl
C01G8.9 944 YARELINATPRRL 956
LysR_substrate: domain 1 of 1, from 1203 to 1227: score 4.2, E = 6.5
*->lvyrrgrrlspavraFidflreala<-*
l+++r +lsp+ +a+ +++ +ala
C01G8.9 1203 LAWPRPTALSPKSQAMEELAHRALA 1227