Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0495.2
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Query: B0495.2 CE01761 CDC2 status:Partially_confirmed SW:Q09437 protein_id:AAA62523.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 274.2 1.7e-78 1
Fringe Fringe-like 3.4 1.7 1
Herpes_UL17 Herpesvirus UL17 protein -0.1 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pkinase 1/1 356 647 .. 1 294 [] 274.2 1.7e-78
Herpes_UL17 1/1 707 718 .. 728 739 .] -0.1 8.6
Fringe 1/1 708 718 .. 243 253 .] 3.4 1.7
Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 356 to 647: score 274.2, E = 1.7e-78
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikek.rfl
ye + ++ eG+fG+Vy++k+k t++iVA+K lk eke++ ++l
B0495.2 356 YECVNRVDEGTFGVVYRGKDK-RTDEIVALKRLKMEKEKEGFPiTAL 401
rEiqilkrLs.HpNIvrligvfed.tddhlylvmEymegGdLfdylrrng
rEi +l + +HpNIv+++++ + d++y+ mE++e+ d++++l
B0495.2 402 REINMLLKAGnHPNIVNVKEILLGsNMDKIYMAMEFVEH-DMKSLLDTMS 450
...gplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvK
+++ ++s e k + Q+l+G+e++H i+HRDLK++N+L +++ g +K
B0495.2 451 rrnKRFSIGEQKTLLQQLLSGIEHMHKLWILHRDLKTSNLLMSHK-GILK 499
iaDFGLArlle.sssklttfvGTpwYmmAPEvileg.rgysskvDvWSlG
iaDFGLAr++ ++ k+t++v T+wY+ +PE+ l+g+r ys++vD+WS+G
B0495.2 500 IADFGLAREYGdPLKKFTSIVVTLWYR-SPEL-LLGtRLYSTPVDMWSVG 547
viLyElltggplfpgadlpaftggd.evdqli.if.vlklPfsdelp.kt
+i++E +plfp g +e++q+ +if +++P++ +p+ t
B0495.2 548 CIMAEFILLKPLFP---------GRgELEQIKkIFmEMGTPTESIWPgVT 588
ridpleelfriikrp...glrlplpsncSeelkdLlkkcLnkDPskRpGs
d++++l ++ ++ + r+ +++ ++ +Ll+++L++DP++R
B0495.2 589 ELDGWKALTFEKYPYnqlRKRFLAGRLLNDTGFKLLNGLLTLDPKNRF-- 636
atakeilnhpwf<-*
+a+++l h wf
B0495.2 637 -SATQALDHEWF 647
Herpes_UL17: domain 1 of 1, from 707 to 718: score -0.1, E = 8.6
*->PGGFaikgryal<-*
PGGF +k++ +
B0495.2 707 PGGFSLKFDPTR 718
Fringe: domain 1 of 1, from 708 to 718: score 3.4, E = 1.7
*->GpFsleeDPtR<-*
G Fsl+ DPtR
B0495.2 708 GGFSLKFDPTR 718