Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0495.5
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Query: B0495.5 CE29948 status:Confirmed SW:Q09214 protein_id:AAA62531.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF255 Protein of unknown function, DUF255 189.0 2e-55 1
PSP1 PSP1 C-terminal conserved region 6.9 1.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF255 1/1 17 89 .. 1 74 [] 189.0 2e-55
PSP1 1/1 402 428 .. 1 28 [. 6.9 1.7
Alignments of top-scoring domains:
DUF255: domain 1 of 1, from 17 to 89: score 189.0, E = 2e-55
*->ktNrLiaekSPYLlqHAhnPVdWypWgeeAFakAkaedkPIlLSiGY
+ NrL++ekSPYLlqHA+nP+dWypWg+eAF+kAk+++kPI+LS+GY
B0495.5 17 YKNRLGQEKSPYLLQHANNPIDWYPWGQEAFQKAKDNNKPIFLSVGY 63
stiCHWChVmakEsfeneeiaailnen<-*
st CHWChVm+kEsfene++a+iln+n
B0495.5 64 ST-CHWCHVMEKESFENEATAKILNDN 89
PSP1: domain 1 of 1, from 402 to 428: score 6.9, E = 1.7
*->plksVlRvADtpeDldtlLhknaeeaea<-*
+k+VlR+ t+e+ +t+ h++ +++++
B0495.5 402 KNKNVLRKLLTDEECATN-HEISVAELK 428