Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/B0464.2
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Query:  B0464.2  CE20456   TPR Domain status:Partially_confirmed SW:Q03560 protein_id:CAA79544.1

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
TPR         TPR Domain                                  138.8      7e-38  10
Zn_dep_PLPC Zinc dependent phospholipase C                6.7        0.4   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Zn_dep_PLPC   1/1     100   125 ..   245   270 ..     6.7      0.4
TPR           1/10    177   210 ..     1    34 []    14.6    0.024
TPR           2/10    212   245 ..     1    34 []    29.0  1.9e-06
TPR           3/10    320   346 ..     1    27 [.    16.4   0.0071
TPR           4/10    355   388 ..     1    34 []    27.7  4.4e-06
TPR           5/10    471   504 ..     1    34 []    27.7  4.2e-06
TPR           6/10    526   559 ..     1    34 []     9.8     0.56
TPR           7/10    594   610 ..     1    17 [.     0.9    2e+02
TPR           8/10    661   677 ..    18    34 .]    15.4    0.014
TPR           9/10    712   745 ..     1    34 []    10.4     0.37
TPR          10/10    748   774 ..     1    27 [.     1.6  1.3e+02

Alignments of top-scoring domains:
Zn_dep_PLPC: domain 1 of 1, from 100 to 125: score 6.7, E = 0.4
                   *->fakwaKqdykgiakaakklyYshatm<-*
                      +a w++q y+  ak++k++++s+at+
     B0464.2   100    AAYWMTQGYREKAKDKKSDFFSKATV    125

TPR: domain 1 of 10, from 177 to 210: score 14.6, E = 0.024
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      +  +  ++++ +++++y+ Ai +++kA++  ++
     B0464.2   177    VLPLIGKAVIAFNKKDYKTAIYYFRKAIRQCRHT    210

TPR: domain 2 of 10, from 212 to 245: score 29.0, E = 1.9e-06
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      a+    +G+++ k+g  d+A  a+e+A e++P n
     B0464.2   212    ADLRVGIGHCFAKMGMMDKAKTAFERAMEIEPYN    245

TPR: domain 3 of 10, from 320 to 346: score 16.4, E = 0.0071
                   *->aeayynlGnaylklgkydeAieayekA<-*
                      aea+y++G + +++g++d A ++y +A
     B0464.2   320    AEAFYQMGRCRHAQGQFDGAYKYYYQA    346

TPR: domain 4 of 10, from 355 to 388: score 27.7, E = 4.4e-06
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                        a+y lG+ y ++++ +eAi++++ + +  Pnn
     B0464.2   355    TLAHYGLGQMYIHRNEIEEAIKCFDTVHKRLPNN    388

TPR: domain 5 of 10, from 471 to 504: score 27.7, E = 4.2e-06
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      +e ++n G++y+++++y++A+ ++++A e  ++
     B0464.2   471    PEMLNNVGALYMSMKQYEKAEHHFKRAKERLEEQ    504

TPR: domain 6 of 10, from 526 to 559: score 9.8, E = 0.56
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                        + ynl++++++l +  eA++ y+  ++  P +
     B0464.2   526    LTIRYNLALCLEHLCRTVEAEQMYKDIVKECPGY    559

TPR: domain 7 of 10, from 594 to 610: score 0.9, E = 2e+02
                   *->aeayynlGnaylklgky<-*
                      + +++ +Gn++++++++
     B0464.2   594    PIVWTLIGNLHFAKNEW    610

TPR: domain 8 of 10, from 661 to 677: score 15.4, E = 0.014
                   *->deAieayekALeldPnn<-*
                      d A++ y+kAL+l+P+n
     B0464.2   661    DRALQMYQKALKLQPKN    677

TPR: domain 9 of 10, from 712 to 745: score 10.4, E = 0.37
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      ++++ n+++++++++++ +A++ y  A +  ++
     B0464.2   712    YDVWLNIAHVCMEREQWMAAVQMYSSAMKKFRKE    745

	[output cut off at A = 10 top alignments]


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