Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0361.3
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Query: B0361.3 CE29547 status:Partially_confirmed SW:Q10947 protein_id:AAK18864.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
sugar_tr Sugar (and other) transporter 36.1 1.1e-09 2
SRP54_N SRP54-type protein, helical bundle do 5.8 4.2 1
DUF436 Protein of unknown function (DUF436) 5.5 0.7 1
NTP_transf_2 Nucleotidyltransferase domain 5.0 6.1 2
Glutaminase Glutaminase 3.9 4.8 1
IstB IstB-like ATP binding protein 3.2 7.6 1
Glucan_synthase 1,3-beta-glucan synthase component -0.1 8.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
NTP_transf_2 1/2 20 48 .. 1 30 [. 2.1 39
IstB 1/1 167 180 .. 136 149 .. 3.2 7.6
Glucan_synthase 1/1 175 198 .. 818 841 .] -0.1 8.4
sugar_tr 1/2 151 295 .. 58 221 .. 46.4 1.3e-12
sugar_tr 2/2 345 418 .. 333 423 .. -2.3 1.3e+02
Glutaminase 1/1 619 632 .. 277 290 .] 3.9 4.8
SRP54_N 1/1 883 919 .. 1 37 [. 5.8 4.2
DUF436 1/1 1024 1041 .. 1 19 [. 5.5 0.7
NTP_transf_2 2/2 1005 1057 .. 68 122 .] 3.2 19
Alignments of top-scoring domains:
NTP_transf_2: domain 1 of 2, from 20 to 48: score 2.1, E = 39
*->ieeilkkikealkelygavaevylfGSyar<-*
++ +kk e+lk+l++ ++ v ++G y++
B0361.3 20 ENNSKKKSSERLKKLDP-DKFVEAYGAYGK 48
IstB: domain 1 of 1, from 167 to 180: score 3.2, E = 7.6
*->iskRYErrSiIlTS<-*
+++RY+r++iI+T+
B0361.3 167 LADRYGRKPIIVTT 180
Glucan_synthase: domain 1 of 1, from 175 to 198: score -0.1, E = 8.4
*->piivnlvllitlflmscsigplls<-*
piiv ++l +l+ m+ s p++
B0361.3 175 PIIVTTAILAFLANMAASFSPNFA 198
sugar_tr: domain 1 of 2, from 151 to 295: score 46.4, E = 1.3e-12
*->sifflGrliGslfaGklgdrfGRkksllialvlfviGallsgaapgy
+if +G+ i f+++l+dr+GRk+++ ++++l++ +++ ++p
B0361.3 151 TIFTIGAVIAVPFMSMLADRYGRKPIIVTTAILAFLANMAASFSP-- 195
tTiGlwafyllivGRvlvGlgvGgasvlvPmYisEiAPkalRGalgslyq
+f+ +++ R ++G + ++++ + E ++ R+ ++++y+
B0361.3 196 ------NFAIFLILRAFIGACSDSYLSVASVATCEYLSEKARAWITVVYN 239
laitiGilvAaiiglglnktnndsalnswgWRiplglqlvpalllligll
+a+++G + ++ l + +t + WR+ ++ ++p++ ++++
B0361.3 240 VAWSLGMV---WTLLVTLMTDD--------WRWRYFIVSLPGVYGFALWY 278
flPESPRwLvekgklee<-*
flPESP+wL+ k k+e+
B0361.3 279 FLPESPHWLITKNKTEK 295
sugar_tr: domain 2 of 2, from 345 to 418: score -2.3, E = 1.3e+02
*->iflvDrfGRRpllllGaagmaicflilgasigvallllnkpkdpssk
i+l+ + GR+ ++++++++++++++ ++ ++l +
B0361.3 345 IPLMMKMGRKMIVIWCLVFQTLALIGVT-----VFLDSYEF------ 380
aagivaivfillfiafFalgwGpipwvilsElFPtkvRskalal<-*
+ v++ + ++++ + +++pi +E FPt+vRs++++l
B0361.3 381 --KLVIMLVAKVMATIIY-SVHPIW---ATEQFPTSVRSLCFSL 418
Glutaminase: domain 1 of 1, from 619 to 632: score 3.9, E = 4.8
*->aLekLaqrtglsiF<-*
a+++L+++++++ +
B0361.3 619 ACKQLVEQLNRNLY 632
SRP54_N: domain 1 of 1, from 883 to 919: score 5.8, E = 4.2
*->vlqgLskslnkalnklrglskideelieevleEieea<-*
+l++L++ +ka + ++ + + e++ee +e+ie++
B0361.3 883 LLSDLKSVVTKAYEEFETNTAGGPEDDEESIENIERI 919
DUF436: domain 1 of 1, from 1024 to 1041: score 5.5, E = 0.7
*->kdlrtvlddlqdqselkqg<-*
+l t++++ +dq+e+k g
B0361.3 1024 -QLSTIVEEYKDQTEIKNG 1041
NTP_transf_2: domain 2 of 2, from 1005 to 1057: score 3.2, E = 19
*->k.e.vkrleelaeiekeleellglevDlv....vreklecilekkad
++++++ lee+ e +++ + l + +++++++++++le
B0361.3 1005 NsTpKVKLEEYLERIALAGQLSTIVEEYKdqteIKNGLE-------- 1043
plvrielleervll<-*
+ +++++++erv++
B0361.3 1044 LKNAKKWMNERVKD 1057