Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0348.6a
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Query: B0348.6a CE17331 locus:ife-3 translation initiation factor status:Partially_confirmed SW:O61955 protein_id:AAC17807.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
IF4E Eukaryotic initiation factor 4E 453.4 1.9e-132 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
IF4E 1/1 2 212 .. 1 248 [] 453.4 1.9e-132
Alignments of top-scoring domains:
IF4E: domain 1 of 1, from 2 to 212: score 453.4, E = 1.9e-132
*->etsepsteetPSirriDphdgDdaEevevpsekalpteaesvsaevs
+ts ++e+ ++ s+++++++++ +s
B0348.6a 2 STS--VAEN------------------KALSASGDVNASD-----AS 23
aPeehllkHPLqrnWTlWYlkpdrgkrfksesWednlkpvttFdTVEeFW
+P+e+l++HPLq++W+lWYlk+dr+k +Wed+lk+v+ FdTVE+FW
B0348.6a 24 VPPELLTRHPLQNRWALWYLKADRNK-----EWEDCLKMVSLFDTVEDFW 68
aLYnhIkrPSeLplgsDyhlFKdGIrPmWEDpaNknGGKWlitlsKgrsp
+LYnhI+++++L++gsDy+lFK+GI+PmWED++N++GG+Wl++++K+r++
B0348.6a 69 SLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRT 118
edLDriWLetLLAlIGEQFDedgdeICGAVvnVRgkgdkISiWTknAsde
++LD++WLe+L+A++GEQFDe+gd+ICGAVvnVR+kgdk+S+WT++A+++
B0348.6a 119 QLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRD 168
eaqlrIGkklKevLnlPSkiHlPdndvleYkvHdDskkktRSstrktryt
+++lrIG++lK++L++P d+++l+Y+vH+Ds+++t Sst+k+r++
B0348.6a 169 DVNLRIGQVLKQKLSIP------DTEILRYEVHKDSSART-SSTVKPRIC 211
l<-*
l
B0348.6a 212 L 212