Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0238.13
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Query: B0238.13 CE29530 carboxylesterase status:Partially_confirmed TR:O16496 protein_id:AAB65992.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
COesterase Carboxylesterase 982.8 8.5e-292 2
DUF244 Uncharacterized protein family (ORF7) 5.9 0.33 1
Baculo_P48 Baculovirus P48 protein 4.3 1.3 1
RFX_DNA_binding RFX DNA-binding domain 2.6 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RFX_DNA_binding 1/1 170 195 .. 1 28 [. 2.6 9.6
COesterase 1/2 1 345 [. 1 387 [. 491.4 7.1e-144
DUF244 1/1 571 589 .. 1 20 [. 5.9 0.33
COesterase 2/2 354 768 .. 41 502 .. 498.5 5.2e-146
Baculo_P48 1/1 787 798 .. 398 409 .] 4.3 1.3
Alignments of top-scoring domains:
RFX_DNA_binding: domain 1 of 1, from 170 to 195: score 2.6, E = 9.6
*->ddaseqNresnrqvfPAtlqWLkenyEe<-*
dd + N+ s q + tlqW ++ ++
B0238.13 170 DDVARGNYGSWDQTM--TLQWVQKHIKS 195
COesterase: domain 1 of 2, from 1 to 345: score 491.4, E = 7.1e-144
*->mglllllllllllllavvataptspedpvVeTsyvgGkvrGlrvkvd
mg++l++l ++++ + + t+ G++r++++++
B0238.13 1 MGGFLSHLKPEQNSKILNSTC---------------GPIRRNIYEHG 32
ggnkpvyaFlGIPYAkPPvGeLRFkkPqPipepWtgvldATkygpaCpQ.
+ k v+ +lGIP+Ak+P+GeLRFkkP+ +e+Wt++ld++kygp CpQ+
B0238.13 33 E--KIVDGYLGIPFAKAPIGELRFKKPVE-AEKWTEPLDCYKYGPGCPQs 79
ndlgfpgfpLAlevmgsemwnkntgvsmSEDCLYLNVytPklasenk..k
++lg+++ p ++ ++ + +CL+LNV++P+++ ++ +++
B0238.13 80 GYLGATLVP--------KGYVELN----EDNCLTLNVFAPRWKVTELpkG 117
lPVmVwIHGGGFqsGsassfslddydgpdlaaekdVVVVtiNYRLGalGF
lPVmV+++GGGF++G +s+++ dy+ + ++ kdV++Vt NYR+G+lGF
B0238.13 118 LPVMVYFYGGGFEIGFSSLYN--DYSLTGSLPLKDVILVTSNYRVGPLGF 165
LstgdselpvppGNaGLlDQvlALrWVqeNIaaFGGDPdnVTlFGeSAGA
++tgd++++ GN+G +DQ++ L+WVq++I++FGGDPdnVT+FG SAG+
B0238.13 166 FTTGDDVAR---GNYGSWDQTMTLQWVQKHIKSFGGDPDNVTIFGTSAGG 212
aSVsllllSppqsrgLFhrAIlqSGsalspwaits.pearnrakrlAkll
aSV+ll+lS p+s +Fhr I++S +a++p +i+s++ + +r k+
B0238.13 213 ASVDLLSLS-PHSNKYFHRFIPMSATAYCPISIRSkD-VEALVFRELKKT 260
GCpgedstelleCLRkksaeelldaqeklllldevgffpffaFgPvvdGd
+ +ds ll++++++++e++ld+ + + + +gf++ F+P++dGd
B0238.13 261 SINNSDSKSLLQWYQSQDSEKFLDVAN--FNRPASGFMS---FVPNFDGD 305
tpdaflpkdPeellkegnfnkvPlliGvtsdEGllflayll.dp.e<-*
f+pk+ +el+ke ++k + +++vt++EGl fl+ +++++++
B0238.13 306 ----FFPKPFDELRKE--APKFDAIVSVTEYEGLGFLSLFPnQEtP 345
DUF244: domain 1 of 1, from 571 to 589: score 5.9, E = 0.33
*->mLKGKELEnLGFREFiKAhG<-*
++ K++E L FREF K hG
B0238.13 571 -IRSKDVEGLIFREFAKHHG 589
COesterase: domain 2 of 2, from 354 to 768: score 498.5, E = 5.2e-146
*->GlrvkvdggnkpvyaFlGIPYAkPPvGeLRFkkPqPipepWtgvldA
G +d g+k v+ +lGIP+Ak+P+G+LRFkk + +e+Wt++ld+
B0238.13 354 G----KDIGDKIVNGYLGIPFAKAPIGDLRFKKSVE-AEKWTEPLDC 395
TkygpaCpQ.ndlgfpgfpLAlevmgsemwnkntgvsmSEDCLYLNVytP
+kygp CpQ++ lg m+s +n++ + +CL LNV++P
B0238.13 396 YKYGPGCPQsGALG--------TMMVSQATNHDFA---EDNCLNLNVFAP 434
klasenk..klPVmVwIHGGGFqsGsassfslddydgpdlaaekdVVVVt
k++s ++++++PVmV+++GGGF++G +s ++ddy+ ++++ kdV++Vt
B0238.13 435 KWKSAEFpnGFPVMVYFYGGGFEVGFSS--MFDDYSLTGTLPLKDVILVT 482
iNYRLGalGFLstgdselpvppGNaGLlDQvlALrWVqeNIaaFGGDPdn
+NYR G+lGF++tgd++ + GN+GL+DQ lAL+WVq++I++FGGDP+n
B0238.13 483 PNYRIGPLGFFATGDDVSR---GNWGLWDQALALQWVQKHIKSFGGDPSN 529
VTlFGeSAGAaSVsllllSppqsrgLFhrAIlqSGsalspwaits.pear
VT+ G SAG+aSV++l+lS p++ +Fh+ I++SG+a++p+ i+s+++
B0238.13 530 VTISGTSAGGASVDFLSLS-PHANKYFHKFIPMSGAATCPFGIRSkDVEG 578
nrakrlAkllGCpgedstelleCLRkksaeelldaqeklllldevgffpf
+++++Ak+ G+ g+ds+ ll+++++++ae +l+a+ + + +g+f+
B0238.13 579 LIFREFAKHHGYAGNDSESLLHWYQSQDAEIFLKAEG--FKCPASGMFS- 625
faFgPvvdGdtpdaflpkdPeellkegnfnkvPlliGvtsdEGllflayl
F+P++dGd f+pk+ +el+ke ++k ++++ ++EGl f ++
B0238.13 626 --FVPNFDGD----FFPKPFDELRKE--APKLGAIVSIGEYEGLGFEDFY 667
l.dp.esadllslldnedlflellpellpgaselltpklreeiadalkee
+++++ ++ l + l ++ ++ +ree++++ e
B0238.13 668 AgQKtP--------------QQMLSAALG-PDVVK---NREEVVKKAEES 699
Ytdddd.nseesr.ealvdllsDylFvcpilrlaaarlakggapvYlYrF
Y+ + ++ +e+++ + lv++++Dy+F ++ + +++l k g++vYlY+F
B0238.13 700 YLKNAGnGNEKNVaKTLVEIYGDYYFSVG-AFDTVRSLVKYGNTVYLYSF 748
dyrssfsfnqylinllwppwmgv<-*
+y ++ n+ ++ p+ ++
B0238.13 749 NYFNP---NTPIVFGKNRPFNAA 768
Baculo_P48: domain 1 of 1, from 787 to 798: score 4.3, E = 1.3
*->DneisvLiekNv<-*
+++is+Li +Nv
B0238.13 787 QEDISRLIIQNV 798