Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/B0238.1
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Query:  B0238.1  CE07691   carboxylesterase status:Partially_confirmed TR:O16497 protein_id:AAB65983.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
COesterase Carboxylesterase                             642.0   3.3e-189   1
DUF244     Uncharacterized protein family (ORF7) DUF      5.9       0.33   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
DUF244       1/1     246   264 ..     1    20 [.     5.9     0.33
COesterase   1/1       1   519 [.     1   592 []   642.0 3.3e-189

Alignments of top-scoring domains:
DUF244: domain 1 of 1, from 246 to 264: score 5.9, E = 0.33
                   *->mLKGKELEnLGFREFiKAhG<-*
                       ++ K++E L FREF K hG
     B0238.1   246    -IRSKDVEGLIFREFAKHHG    264

COesterase: domain 1 of 1, from 1 to 519: score 642.0, E = 3.3e-189
                   *->mglllllllllllllavvataptspedpvVeTsyvgGkvrGlrvkvd
                      mg++l++l ++++  + +a++               G++rG+++++d
     B0238.1     1    MGGFLSHLKPEHNTEVLNASC---------------GPIRGNIYEHD 32

                   ggnkpvyaFlGIPYAkPPvGeLRFkkPqPipepWtgvldATkygpaCpQ.
                   +  k v+ +lGIP+Ak+P+GeLRFkk +  +e+Wt++ld++kygp CpQ+
     B0238.1    33 D--KIVDGYLGIPFAKAPIGELRFKKSVE-AEKWTEPLDCYKYGPGCPQs 79

                   ndlgfpgfpLAlevmgsemwnkntgvsmSEDCLYLNVytPklasenk..k
                   + lg         +m  ++  ++++   + +CL+LNV++Pk++s +++++
     B0238.1    80 GALG---------AMIVPQASAIRE-FAEDNCLTLNVFAPKWKSAEFpnG 119

                   lPVmVwIHGGGFqsGsassfslddydgpdlaaekdVVVVtiNYRLGalGF
                   lPV+V+++GGGF++G +s  ++ddy+  ++++ kdV++Vt+NYR G+lGF
     B0238.1   120 LPVIVYFYGGGFEVGFSS--MFDDYSLTGTLPLKDVILVTPNYRIGPLGF 167

                   LstgdselpvppGNaGLlDQvlALrWVqeNIaaFGGDPdnVTlFGeSAGA
                   ++tgd++ +   GN+GL+DQ lAL+WVq++I++FGGDP+nVT+ G SAG+
     B0238.1   168 FATGDDVSR---GNWGLWDQALALQWVQKHIKSFGGDPSNVTISGTSAGG 214

                   aSVsllllSppqsrgLFhrAIlqSGsalspwaits.pearnrakrlAkll
                   aSV++l+lS p++  +Fh+ I++SG+a++p+ i+s+++   +++++Ak+
     B0238.1   215 ASVDFLSLS-PHANKYFHKFIPMSGAATCPFGIRSkDVEGLIFREFAKHH 263

                   GCpgedstelleCLRkksaeelldaqeklllldevgffpffaFgPvvdGd
                   G+ g+ds+ ll+++++++ae +l+a+   + ++ +g+f+   F+P++dGd
     B0238.1   264 GYAGNDSESLLHWYQSQDAEIFLKAEG--FKYPASGMFS---FVPNYDGD 308

                   tpdaflpkdPeellkegnfnkvPlliGvtsdEGllflayll.dp.esadl
                       f+pk+ +el+ke  ++k + +++v ++EGl f  ++++++++
     B0238.1   309 ----FFPKPFDELRKE--APKLDAIVSVAEYEGLGFEEFYPgQKsP---- 348

                   lslldnedlflellpellpgaselltpklreeiadalkeeYtdd.ddnse
                             +e+l + l  +  +    +ree++++ +e Y+++ +d s
     B0238.1   349 ----------QEVLTAALG-PEVVR---NREEVVKKAVEAYLENiEDKSG 384

                   esr.ealvdllsDylFvcpilrlaaarlakggapvYlYrFdyrssfsfnq
                   e ++++lv++++Dy+F ++     +++lak g++vYl +F+y ++    +
     B0238.1   385 EKIgKKLVEIFGDYYFSVG-VFDTVRSLAKYGNNVYLSSFNYFNPE---T 430

                   ylinllwppwmgvsHgdelsYvFGnpls.klyteeeeklssrrmmrywtn
                    ++     p+ ++sHg ++ Y++G ++ ++ +  e++k ++++m +y+tn
     B0238.1   431 PIMFGENRPFNAASHGCDIRYILGDGIGeFSK--EDRK-VMDMMGTYLTN 477

                   FAktGnPNngessglpkWppytseeqkYyllntlltistk.lreedprkv
                   FAk+GnP  ++  +++ W++y+ +     ++ ++++i++++++++d
     B0238.1   478 FAKYGNP--NGKGVSIPWEKYSLD-----NPGRYFKIDYPkCEMAD---- 516

                   kcafw<-*
                     +f
     B0238.1   517 --NFL    519



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