Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/B0218.2
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Query:  B0218.2  CE06685   amidase status:Partially_confirmed TR:Q17447 protein_id:AAB00665.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Amidase       Amidase                                   565.0     5e-166   1
Polysacc_synt Polysaccharide biosynthesis protein         6.6        1.3   1
ICL           Isocitrate lyase family                     0.4        1.8   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
ICL             1/1     181   195 ..   404   418 ..     0.4      1.8
Polysacc_synt   1/1     412   431 ..   276   296 .]     6.6      1.3
Amidase         1/1      85   558 ..     1   521 []   565.0   5e-166

Alignments of top-scoring domains:
ICL: domain 1 of 1, from 181 to 195: score 0.4, E = 1.8
                   *->VkakfPdqlLAYNLS<-*
                      V   +P+ lL+YN+S
     B0218.2   181    VQTNVPQSLLSYNCS    195

Polysacc_synt: domain 1 of 1, from 412 to 431: score 6.6, E = 1.3
                   *->llsliasivtavlfPrfsklq<-*
                      ++++++si+  v+fPr+ +l+
     B0218.2   412    IQRFLSSIIK-VFFPRLGNLM    431

Amidase: domain 1 of 1, from 85 to 558: score 565.0, E = 5e-166
                   *->ElveaflarieaanpklNvtafvtvffeeAlaaAkaadkrrarkrgg
                      ++v++++a++ +an+k+N   +v++f +eA+++A  +d++++ ++ +
     B0218.2    85    DAVRTYYAKAISANEKTN---SVCMFVKEAEKWAMDWDEKAK-DPQF 127

                   ekgPLhGvPialKDnidvkGvpTTaGskalegypppyDAtvVerLraaGA
                   +k+PL+G+P++lK+++  +G++ T+G+ + +++p ++D ++V++L+++GA
     B0218.2   128 QKPPLFGLPMSLKECVPLEGYDQTRGFVQDTFRPTETDGVLVQQLKKLGA 177

                   vilGKTNmdEfamgsttensafGpTrNPwdlsrtpGGSSGGSAAaVAagl
                   +++++TN++++++++ ++n+++G+T++P+d++rt+GGSSGG+ A+++a++
     B0218.2   178 IPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSGGSSGGESALISADG 227

                   vplAiGtDTGGSIRiPAafCGlvGlKPTyGRvSryGvvgSveplssslDq
                   ++l+iG+D+GGSIRiP+a++G++G+KP++ R+S++Gv+gSv++++ + +
     B0218.2   228 SLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGVCGSVPGRPLINSN 277

                   vGPlARsVeDaAllLdviaGydpgDptsadsppPtvpwdpvpdyaeglkk
                    GP++++Ve ++ +L+ ++  d++   +++++pP v+w+++      ++k
     B0218.2   278 DGPMSTRVETNVDFLRTVW-ADTWITEQDPYVPP-VTWNEE------AYK 319

                   dlkgLRiGvpredfgddLdhVaActIRLdgldfvEaDipialnyasldpe
                   ++k+L+iG++++d+                             +++++p+
     B0218.2   320 SDKKLKIGYYVDDG-----------------------------WFTPTPV 340

                   vdeavekaaaaLeelGhhevvevslpslkealplyyliapaeassnlary
                   +++av++a++ Le+ G h++v++ +p+++e l+++   ++++a++ l+++
     B0218.2   341 CQRAVMEAKQILEDSG-HTLVPFRPPRVPEVLRMFLRAVCVDAGTFLSKK 389

                   dGvryGergleddeasdldelyprtraeglgdevkrrielgayalsagys
                   +++++++++l+ +   ++ ++ p +++++l+ ++k  +++ +++++a++
     B0218.2   390 LMNDIIDPLLYTQ---VVLWMVPVPIQRFLSSIIKVFFPRLGNLMDAMTL 436

                   dayeylkaqkvrrllrrefdglFeehgvDvLisPTtptpAprigepdkli
                   ++ e++  +++++ +r e++gl+ ++++D+L++P+t  pA ++  p+kl+
     B0218.2   437 STVELRNTYADIEAYRSEMAGLMVDQKIDALLCPVTVSPALPHVSPSKLF 486

                   seaddytvlyllddftantvPaNlaGlPaiSvPvgfspeds.wdalvk.e
                    ++ +yt +++l+d+ a++v ++ ++++++ + + +++e+++w+al+k++
     B0218.2   487 -AGTSYTGIFNLLDYAAGSVNVTHVTKQDE-LDLEDYEESDpWYALAKkG 534

                   ylpegyvGLPvGlQiiGkpgdeetLL<-*
                   ++  g++G+P+G+Q+  +p+ eet+L
     B0218.2   535 SR--GTIGFPIGVQVATPPYKEETCL    558



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