Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0218.2
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Query: B0218.2 CE06685 amidase status:Partially_confirmed TR:Q17447 protein_id:AAB00665.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Amidase Amidase 565.0 5e-166 1
Polysacc_synt Polysaccharide biosynthesis protein 6.6 1.3 1
ICL Isocitrate lyase family 0.4 1.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ICL 1/1 181 195 .. 404 418 .. 0.4 1.8
Polysacc_synt 1/1 412 431 .. 276 296 .] 6.6 1.3
Amidase 1/1 85 558 .. 1 521 [] 565.0 5e-166
Alignments of top-scoring domains:
ICL: domain 1 of 1, from 181 to 195: score 0.4, E = 1.8
*->VkakfPdqlLAYNLS<-*
V +P+ lL+YN+S
B0218.2 181 VQTNVPQSLLSYNCS 195
Polysacc_synt: domain 1 of 1, from 412 to 431: score 6.6, E = 1.3
*->llsliasivtavlfPrfsklq<-*
++++++si+ v+fPr+ +l+
B0218.2 412 IQRFLSSIIK-VFFPRLGNLM 431
Amidase: domain 1 of 1, from 85 to 558: score 565.0, E = 5e-166
*->ElveaflarieaanpklNvtafvtvffeeAlaaAkaadkrrarkrgg
++v++++a++ +an+k+N +v++f +eA+++A +d++++ ++ +
B0218.2 85 DAVRTYYAKAISANEKTN---SVCMFVKEAEKWAMDWDEKAK-DPQF 127
ekgPLhGvPialKDnidvkGvpTTaGskalegypppyDAtvVerLraaGA
+k+PL+G+P++lK+++ +G++ T+G+ + +++p ++D ++V++L+++GA
B0218.2 128 QKPPLFGLPMSLKECVPLEGYDQTRGFVQDTFRPTETDGVLVQQLKKLGA 177
vilGKTNmdEfamgsttensafGpTrNPwdlsrtpGGSSGGSAAaVAagl
+++++TN++++++++ ++n+++G+T++P+d++rt+GGSSGG+ A+++a++
B0218.2 178 IPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSGGSSGGESALISADG 227
vplAiGtDTGGSIRiPAafCGlvGlKPTyGRvSryGvvgSveplssslDq
++l+iG+D+GGSIRiP+a++G++G+KP++ R+S++Gv+gSv++++ + +
B0218.2 228 SLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGVCGSVPGRPLINSN 277
vGPlARsVeDaAllLdviaGydpgDptsadsppPtvpwdpvpdyaeglkk
GP++++Ve ++ +L+ ++ d++ +++++pP v+w+++ ++k
B0218.2 278 DGPMSTRVETNVDFLRTVW-ADTWITEQDPYVPP-VTWNEE------AYK 319
dlkgLRiGvpredfgddLdhVaActIRLdgldfvEaDipialnyasldpe
++k+L+iG++++d+ +++++p+
B0218.2 320 SDKKLKIGYYVDDG-----------------------------WFTPTPV 340
vdeavekaaaaLeelGhhevvevslpslkealplyyliapaeassnlary
+++av++a++ Le+ G h++v++ +p+++e l+++ ++++a++ l+++
B0218.2 341 CQRAVMEAKQILEDSG-HTLVPFRPPRVPEVLRMFLRAVCVDAGTFLSKK 389
dGvryGergleddeasdldelyprtraeglgdevkrrielgayalsagys
+++++++++l+ + ++ ++ p +++++l+ ++k +++ +++++a++
B0218.2 390 LMNDIIDPLLYTQ---VVLWMVPVPIQRFLSSIIKVFFPRLGNLMDAMTL 436
dayeylkaqkvrrllrrefdglFeehgvDvLisPTtptpAprigepdkli
++ e++ +++++ +r e++gl+ ++++D+L++P+t pA ++ p+kl+
B0218.2 437 STVELRNTYADIEAYRSEMAGLMVDQKIDALLCPVTVSPALPHVSPSKLF 486
seaddytvlyllddftantvPaNlaGlPaiSvPvgfspeds.wdalvk.e
++ +yt +++l+d+ a++v ++ ++++++ + + +++e+++w+al+k++
B0218.2 487 -AGTSYTGIFNLLDYAAGSVNVTHVTKQDE-LDLEDYEESDpWYALAKkG 534
ylpegyvGLPvGlQiiGkpgdeetLL<-*
++ g++G+P+G+Q+ +p+ eet+L
B0218.2 535 SR--GTIGFPIGVQVATPPYKEETCL 558