hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/B0035.3
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Query:  B0035.3  CE05161   viral non-structural protein like status:Confirmed TR:Q17432 protein_id:CAA97408.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
A1pp     Appr-1"-p processing enzyme family             210.3    2.9e-59   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
A1pp       1/1      42   158 ..     1   125 []   210.3  2.9e-59

Alignments of top-scoring domains:
A1pp: domain 1 of 1, from 42 to 158: score 210.3, E = 2.9e-59
                   *->VNAANsrllhGgGVcgAIaraaG.elqrywpeafekarkqqGgdycp
                      VNAANsrl++GgGV+gAI+raaG+++   ++e+++++++      c+
     B0035.3    42    VNAANSRLAGGGGVDGAIHRAAGrKQ---LQEECQQYNG------CA 79

                   vGeAvltpgggLp.akyVIHaVGPnfsgPvseeegdelLakAYrailrla
                   vG+Av+t+g++++++k++IH+VGP+++g ++++e++e+L ++Yr++l++a
     B0035.3    80 VGDAVITSGCNINhIKKIIHTVGPQVYG-NVTDERRENLVACYRTSLDIA 128

                   nengiksvAfPllSTGIYGgpkdraaqsll<-*
                    eng+ks+Af+++STG+YG+p+d+aa++++
     B0035.3   129 IENGMKSIAFCCISTGVYGYPNDDAAKTVT    158

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