Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0035.14
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: B0035.14 CE05169 locus:dnj-1 DNAJ protein like status:Confirmed TR:Q17438 protein_id:CAA97416.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DnaJ DnaJ domain 117.9 1.9e-31 1
TPR TPR Domain 8.0 1.8 2
DUF502 Protein of unknown function (DUF502) 5.3 3.1 1
MgtE_N MgtE intracellular domain 3.6 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TPR 1/2 10 43 .. 1 34 [] 4.5 19
MgtE_N 1/1 11 51 .. 1 41 [. 3.6 9.9
TPR 2/2 175 193 .. 1 19 [. 3.5 35
DnaJ 1/1 137 201 .. 1 79 [] 117.9 1.9e-31
DUF502 1/1 270 302 .. 1 37 [. 5.3 3.1
Alignments of top-scoring domains:
TPR: domain 1 of 2, from 10 to 43: score 4.5, E = 19
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+ + ++ k g+ d+A + kA +ldP
B0035.14 10 SLLCMDKAREAIKSGDTDKARRMLLKAKKLDPGQ 43
MgtE_N: domain 1 of 1, from 11 to 51: score 3.6, E = 9.9
*->delleqietlledgdydalrekLeelhpaDiAeiLesLppe<-*
++ ++++++gd+d++r++L++ D ++ +e L+ +
B0035.14 11 LLCMDKAREAIKSGDTDKARRMLLKAKKLDPGQNIEFLTKK 51
TPR: domain 2 of 2, from 175 to 193: score 3.5, E = 35
*->aeayynlGnaylklgkyde<-*
ea++ lGnay l + d+
B0035.14 175 TEAFKALGNAYAVLSDTDK 193
DnaJ: domain 1 of 1, from 137 to 201: score 117.9, E = 1.9e-31
*->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktlerae
dyYeiL +++ Asd++I+K YRkLAlk+HPDK+ +
B0035.14 137 DYYEILKIDKKASDDDIRKEYRKLALKLHPDKCRAPH---------- 173
skeeAeekFkeIneAYevLsDpekRaiYDqyg<-*
A+e+Fk + AY vLsD +kR++YDqyg
B0035.14 174 ----ATEAFKALGNAYAVLSDTDKRRQYDQYG 201
DUF502: domain 1 of 1, from 270 to 302: score 5.3, E = 3.1
*->gfpiaGlgfivaillivlLllAiflvGllarlmlGrr<-*
++ g+++++l + +Ai ++Glla+lm+G +
B0035.14 270 EQQQSPYGPLLQLLPL----IAIMVIGLLAQLMVGEP 302